Variant report

Variant	rs2092262
Chromosome Location	chr6:146037105-146037106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146035079..146038031-chr6:146057257..146059128,2	K562	blood:

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs1004752	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011596	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1011597	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10214925	0.83[EUR][1000 genomes]
rs10447449	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1045820	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1055212	0.84[EUR][1000 genomes]
rs1070516	0.86[ASN][1000 genomes]
rs10872579	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872580	0.80[EUR][1000 genomes]
rs11155442	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11965018	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12190966	0.88[ASN][1000 genomes]
rs12199362	0.80[EUR][1000 genomes]
rs12211884	0.82[AMR][1000 genomes]
rs1292333	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1292334	0.81[EUR][1000 genomes]
rs1292336	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1292337	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1292338	0.87[ASN][1000 genomes]
rs1292339	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1337839	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1337840	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337841	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13437042	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415744	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1415746	0.81[EUR][1000 genomes]
rs1415747	0.81[EUR][1000 genomes]
rs1569540	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1577916	0.83[EUR][1000 genomes]
rs1883365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1890171	0.80[EUR][1000 genomes]
rs1935616	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2050027	0.84[EUR][1000 genomes]
rs2064185	0.82[EUR][1000 genomes]
rs2072911	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092263	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142981	0.81[EUR][1000 genomes]
rs2142983	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2179323	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328704	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328707	0.84[EUR][1000 genomes]
rs2328709	0.80[EUR][1000 genomes]
rs3811102	0.80[EUR][1000 genomes]
rs426874	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4332001	0.83[ASN][1000 genomes]
rs439035	0.81[ASN][1000 genomes]
rs441290	0.81[ASN][1000 genomes]
rs4455694	0.85[EUR][1000 genomes]
rs446031	0.81[ASN][1000 genomes]
rs453834	0.81[ASN][1000 genomes]
rs4634475	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4895683	0.84[EUR][1000 genomes]
rs4895684	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4896820	0.81[ASN][1000 genomes]
rs4896821	0.81[ASN][1000 genomes]
rs4896824	0.82[ASN][1000 genomes]
rs4896829	0.88[EUR][1000 genomes]
rs4896831	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896832	0.81[EUR][1000 genomes]
rs4896833	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896837	0.85[EUR][1000 genomes]
rs4896838	0.85[EUR][1000 genomes]
rs4896839	0.85[EUR][1000 genomes]
rs4896841	0.84[EUR][1000 genomes]
rs4896842	0.84[EUR][1000 genomes]
rs4896843	0.84[EUR][1000 genomes]
rs4896844	0.81[EUR][1000 genomes]
rs55810423	0.86[EUR][1000 genomes]
rs57700188	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62433835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62438257	0.84[AMR][1000 genomes]
rs6570700	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6570701	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6570703	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570705	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570706	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570713	0.81[EUR][1000 genomes]
rs6570715	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6570719	0.85[EUR][1000 genomes]
rs6570723	0.83[ASN][1000 genomes]
rs6570724	0.83[ASN][1000 genomes]
rs6899900	0.81[ASN][1000 genomes]
rs6901888	0.86[EUR][1000 genomes]
rs6902404	0.81[ASN][1000 genomes]
rs6902913	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6903252	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6906258	0.81[EUR][1000 genomes]
rs6906402	0.81[EUR][1000 genomes]
rs6915718	0.81[EUR][1000 genomes]
rs6917135	0.83[ASN][1000 genomes]
rs6919684	0.81[ASN][1000 genomes]
rs6921073	0.88[ASN][1000 genomes]
rs6923678	0.84[EUR][1000 genomes]
rs6928007	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930154	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6932863	0.80[EUR][1000 genomes]
rs6933161	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697054	0.84[EUR][1000 genomes]
rs697055	0.84[EUR][1000 genomes]
rs697056	0.84[EUR][1000 genomes]
rs702305	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs702309	0.80[EUR][1000 genomes]
rs702313	0.85[EUR][1000 genomes]
rs702314	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702317	0.85[EUR][1000 genomes]
rs702318	0.85[EUR][1000 genomes]
rs702319	0.85[EUR][1000 genomes]
rs702320	0.84[EUR][1000 genomes]
rs702321	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702323	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702324	0.85[EUR][1000 genomes]
rs735535	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs735536	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7739735	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7740785	0.86[EUR][1000 genomes]
rs7742333	0.83[ASN][1000 genomes]
rs7744014	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7745696	0.81[ASN][1000 genomes]
rs7752286	0.81[EUR][1000 genomes]
rs7753770	0.83[EUR][1000 genomes]
rs7762562	0.82[ASN][1000 genomes]
rs7772286	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs857875	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs857877	0.81[EUR][1000 genomes]
rs857879	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs857880	0.81[EUR][1000 genomes]
rs857882	0.81[EUR][1000 genomes]
rs857883	0.81[EUR][1000 genomes]
rs870491	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9373471	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373473	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373475	0.80[EUR][1000 genomes]
rs9373476	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376954	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376955	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376956	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376957	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376961	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9386128	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386131	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386132	0.80[EUR][1000 genomes]
rs9386133	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390343	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390344	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390348	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390349	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390354	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9390355	0.84[EUR][1000 genomes]
rs9390356	0.80[EUR][1000 genomes]
rs9390357	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390358	0.88[ASN][1000 genomes]
rs9399555	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9399559	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399564	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9399565	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403737	0.81[EUR][1000 genomes]
rs9403739	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403741	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403742	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403746	0.85[EUR][1000 genomes]
rs9403747	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485018	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485019	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9485021	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485024	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497357	0.81[ASN][1000 genomes]
rs9497380	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497395	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497396	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497401	0.84[EUR][1000 genomes]
rs9497406	0.84[EUR][1000 genomes]
rs9497419	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs952405	0.82[ASN][1000 genomes]
rs991507	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:146007400-146043800	Weak transcription	Liver	Liver
3	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
4	chr6:146027600-146043400	Weak transcription	Psoas Muscle	Psoas
5	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:146029800-146037800	Weak transcription	Right Ventricle	heart
7	chr6:146030000-146043000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:146030200-146037800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:146034200-146038000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:146035800-146055200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:146036000-146037200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:146036200-146044200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:146036200-146049800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:146036200-146054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:146036400-146037200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr6:146036600-146037600	Strong transcription	Primary T cells from cord blood	blood
18	chr6:146036600-146037600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:146036600-146038200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:146036600-146044600	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:146036800-146037800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:146036800-146040000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:146036800-146050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:146036800-146050000	Weak transcription	Thymus	Thymus
25	chr6:146037000-146038000	Strong transcription	Primary B cells from cord blood	blood
26	chr6:146037000-146052000	Weak transcription	Ovary	ovary

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