Variant report

Variant	rs62438257
Chromosome Location	chr6:145987963-145987964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 187 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs1004752	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1011596	0.83[AMR][1000 genomes]
rs1011597	0.84[AMR][1000 genomes]
rs1045820	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1070516	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1070517	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1070519	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1070520	0.82[EUR][1000 genomes]
rs10872577	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10872579	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11155433	0.80[EUR][1000 genomes]
rs11155435	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155438	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11965018	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12205752	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12208019	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12208812	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12211884	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1280275	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1280276	0.85[ASN][1000 genomes]
rs1292333	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1292334	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1292336	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1292337	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1292338	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1292339	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1337839	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1337840	0.82[AMR][1000 genomes]
rs1337841	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1415744	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1569540	0.84[AMR][1000 genomes]
rs1883365	0.84[AMR][1000 genomes]
rs1935612	0.80[EUR][1000 genomes]
rs1935616	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2092262	0.84[AMR][1000 genomes]
rs2092263	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2092295	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2092296	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2092297	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2096201	0.87[ASN][1000 genomes]
rs2103633	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2142983	0.84[AMR][1000 genomes]
rs2179323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2328704	0.84[AMR][1000 genomes]
rs35970782	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs365747	0.85[ASN][1000 genomes]
rs365869	0.85[ASN][1000 genomes]
rs367065	0.85[ASN][1000 genomes]
rs370112	0.83[ASN][1000 genomes]
rs370654	0.85[ASN][1000 genomes]
rs371186	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs376257	0.83[ASN][1000 genomes]
rs378937	0.84[EUR][1000 genomes]
rs383841	0.85[ASN][1000 genomes]
rs385729	0.81[ASN][1000 genomes]
rs392612	0.85[ASN][1000 genomes]
rs400329	0.85[ASN][1000 genomes]
rs408443	0.85[ASN][1000 genomes]
rs409553	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs411785	0.85[ASN][1000 genomes]
rs414600	0.85[ASN][1000 genomes]
rs418701	0.85[ASN][1000 genomes]
rs426874	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs427128	0.85[ASN][1000 genomes]
rs4332001	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4335004	0.85[ASN][1000 genomes]
rs435671	0.85[ASN][1000 genomes]
rs436156	0.85[ASN][1000 genomes]
rs436498	0.85[ASN][1000 genomes]
rs437147	0.83[ASN][1000 genomes]
rs439035	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs440477	0.81[ASN][1000 genomes]
rs441290	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs443628	0.85[ASN][1000 genomes]
rs446031	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs446362	0.85[ASN][1000 genomes]
rs448258	0.85[ASN][1000 genomes]
rs450921	0.85[ASN][1000 genomes]
rs453834	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4634475	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4896820	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4896821	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4896824	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4896829	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896831	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4896832	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896833	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55810423	0.81[AMR][1000 genomes]
rs57700188	0.83[AMR][1000 genomes]
rs62433835	0.84[AMR][1000 genomes]
rs6570692	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570700	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570701	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570703	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570705	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570706	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570708	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570715	0.84[AMR][1000 genomes]
rs6899702	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6899900	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6900040	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6902404	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6902410	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912079	0.85[ASN][1000 genomes]
rs6913727	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914203	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6915094	0.85[ASN][1000 genomes]
rs6919684	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6923074	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6925594	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6928007	0.84[AMR][1000 genomes]
rs6930154	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6933161	0.84[AMR][1000 genomes]
rs6941429	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs697053	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs697054	0.80[ASN][1000 genomes]
rs697055	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs697056	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs702304	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702305	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs702306	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702307	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702309	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702314	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs702315	0.81[AMR][1000 genomes]
rs702321	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs702323	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs735535	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs735536	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7746330	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7755253	0.83[ASN][1000 genomes]
rs7755887	0.83[ASN][1000 genomes]
rs7762536	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772286	0.81[EUR][1000 genomes]
rs7772717	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7773939	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs857875	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857877	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857879	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs857880	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857881	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs857882	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857883	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs864148	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs870491	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322028	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322029	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373463	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9373464	0.80[EUR][1000 genomes]
rs9373471	0.84[AMR][1000 genomes]
rs9376950	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376954	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376955	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9376956	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9376957	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376961	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9386128	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9390336	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390338	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390343	0.80[AMR][1000 genomes]
rs9390344	0.84[AMR][1000 genomes]
rs9390348	0.83[AMR][1000 genomes]
rs9390349	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9399553	0.85[ASN][1000 genomes]
rs9399555	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9399559	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9399561	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399564	0.84[AMR][1000 genomes]
rs9399565	0.84[AMR][1000 genomes]
rs9403726	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9403729	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403730	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403731	0.80[EUR][1000 genomes]
rs9403734	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403735	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403737	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403739	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9403741	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9485018	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9485019	0.89[AMR][1000 genomes]
rs9485021	0.84[AMR][1000 genomes]
rs9497357	0.80[EUR][1000 genomes]
rs9497380	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9497395	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9497396	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs952405	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs952406	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62438257	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
3	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:145973600-145990600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145974200-146002800	Weak transcription	Liver	Liver
6	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
8	chr6:145982800-145989800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:145982800-146003000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:145984400-145989400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:145984400-146003000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:145984600-145997600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:145986400-145991000	Weak transcription	Psoas Muscle	Psoas
14	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:145987600-146003000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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