Variant report

Variant	rs4896831
Chromosome Location	chr6:145959481-145959482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs1004752	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1011596	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1011597	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs1045820	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1070516	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1070517	0.82[EUR][1000 genomes]
rs1070519	0.82[EUR][1000 genomes]
rs10872579	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872580	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs11155433	0.89[ASN][1000 genomes]
rs11155438	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs11965018	0.85[ASN][1000 genomes]
rs12199362	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs12205752	0.81[AMR][1000 genomes]
rs12211884	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1280275	0.81[AMR][1000 genomes]
rs1292333	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1292334	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs1292335	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1292336	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292337	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292338	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337839	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1337840	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1337841	0.93[CEU][hapmap]
rs1396648	0.85[CEU][hapmap]
rs1415744	0.92[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1415746	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs1415747	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs1569540	0.85[ASN][1000 genomes]
rs1883365	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1890171	0.89[CEU][hapmap]
rs1935612	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1935616	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935617	0.85[EUR][1000 genomes]
rs2050027	0.93[CEU][hapmap]
rs2064185	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs2092262	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2092263	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2092295	0.81[AMR][1000 genomes]
rs2092296	0.81[AMR][1000 genomes]
rs2092297	0.81[AMR][1000 genomes]
rs2103633	0.81[AMR][1000 genomes]
rs2142983	0.82[CEU][hapmap];0.84[ASN][1000 genomes]
rs2179323	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35970782	0.84[AMR][1000 genomes]
rs371186	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372904	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs373704	0.81[EUR][1000 genomes]
rs373778	0.82[EUR][1000 genomes]
rs378937	0.81[EUR][1000 genomes]
rs379040	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3811102	0.89[CEU][hapmap]
rs386678	0.82[EUR][1000 genomes]
rs404229	0.82[EUR][1000 genomes]
rs405622	0.81[EUR][1000 genomes]
rs409553	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs414297	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs426874	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4332001	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs439035	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs441290	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs441364	0.80[EUR][1000 genomes]
rs444564	0.81[EUR][1000 genomes]
rs446031	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs450973	0.81[EUR][1000 genomes]
rs453834	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs455109	0.82[EUR][1000 genomes]
rs4634475	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895678	0.83[EUR][1000 genomes]
rs4895683	0.93[CEU][hapmap]
rs4896820	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896821	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896824	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896829	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4896832	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896833	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896837	0.89[CEU][hapmap]
rs4896838	0.89[CEU][hapmap]
rs57700188	0.84[ASN][1000 genomes]
rs62433835	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62438257	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6570700	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570701	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570703	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570705	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570706	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570708	0.89[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs6570723	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs6570726	0.89[CEU][hapmap]
rs6899702	0.81[AMR][1000 genomes]
rs6899900	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6900040	0.81[AMR][1000 genomes]
rs6901888	0.89[CEU][hapmap]
rs6902404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903252	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906258	0.89[CEU][hapmap]
rs6906402	0.89[CEU][hapmap]
rs6913727	0.81[AMR][1000 genomes]
rs6914203	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6915718	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs6917135	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs6919684	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6923074	0.81[AMR][1000 genomes]
rs6925594	0.81[AMR][1000 genomes]
rs6930154	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs6933161	0.80[ASN][1000 genomes]
rs6941429	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs697053	0.89[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs697054	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs697055	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs702304	0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs702305	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702306	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs702307	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs702309	0.84[EUR][1000 genomes]
rs702314	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702318	0.89[CEU][hapmap]
rs702319	0.94[JPT][hapmap]
rs702321	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702323	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs702324	0.89[CEU][hapmap]
rs735535	0.85[AMR][1000 genomes]
rs735536	0.85[AMR][1000 genomes]
rs7739735	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7742333	0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs7744014	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7752286	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs7753770	0.89[CEU][hapmap]
rs7762536	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7762562	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs7772286	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772717	0.85[EUR][1000 genomes]
rs7773939	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs857875	0.92[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs857877	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs857879	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857880	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs857881	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs857882	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs857883	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs864148	0.83[EUR][1000 genomes]
rs870491	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373463	0.81[AMR][1000 genomes]
rs9373464	0.89[ASN][1000 genomes]
rs9373471	0.86[ASN][1000 genomes]
rs9373473	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9373475	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs9373476	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9376954	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376956	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376957	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376961	0.92[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs9386128	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9386133	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390336	0.81[AMR][1000 genomes]
rs9390343	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9390344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390348	0.86[ASN][1000 genomes]
rs9390349	0.85[ASN][1000 genomes]
rs9390356	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs9390357	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390358	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9399555	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399559	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399561	0.89[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs9399565	0.80[ASN][1000 genomes]
rs9403726	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9403731	0.89[ASN][1000 genomes]
rs9403737	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs9403739	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9403741	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403742	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9403747	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9485018	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485019	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9485021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9485024	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9497357	0.91[ASN][1000 genomes]
rs9497380	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497395	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9497396	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951143	0.83[EUR][1000 genomes]
rs952405	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952406	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145948800-145962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
4	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
6	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:145955000-145962400	Weak transcription	Psoas Muscle	Psoas
9	chr6:145955200-145976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:145955600-145977400	Weak transcription	Left Ventricle	heart
11	chr6:145958600-145959600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:145958600-145960200	Enhancers	Fetal Heart	heart

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