Variant report

Variant	rs9373475
Chromosome Location	chr6:146126419-146126420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65265648..65267298-chr6:146124589..146126834,2	MCF-7	breast:
2	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:
3	chr6:146088676..146091245-chr6:146126416..146129256,2	K562	blood:
4	chr6:146125578..146127753-chr6:146287911..146290228,2	K562	blood:
5	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
6	chr6:146109509..146111259-chr6:146124706..146127003,2	K562	blood:
7	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
8	chr6:146120708..146122690-chr6:146126076..146128209,2	MCF-7	breast:
9	chr6:146054602..146056555-chr6:146125014..146127931,2	MCF-7	breast:
10	chr6:146076265..146078727-chr6:146125828..146127450,2	MCF-7	breast:
11	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270117	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 266 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:264)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs1011596	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs1011597	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10214925	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10223507	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap]
rs10447449	0.99[EUR][1000 genomes]
rs1045820	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs1055212	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062067	0.89[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1062068	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1070517	0.83[EUR][1000 genomes]
rs1070519	0.83[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10872580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155438	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11155442	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1133832	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs11760	0.81[EUR][1000 genomes]
rs11965018	0.91[EUR][1000 genomes]
rs12190966	0.98[EUR][1000 genomes]
rs12199362	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292333	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1292334	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs1292336	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1292337	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs1292339	0.89[CEU][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap]
rs13214277	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1337839	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1337840	0.81[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1337841	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13437042	0.94[EUR][1000 genomes]
rs1415744	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415746	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415747	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569540	0.92[EUR][1000 genomes]
rs1577916	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs1883365	0.96[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs1890171	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986729	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2050027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2072911	0.85[EUR][1000 genomes]
rs2092262	0.80[EUR][1000 genomes]
rs2092263	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs2142978	0.95[JPT][hapmap]
rs2142980	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2142981	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142983	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2235481	0.89[JPT][hapmap]
rs2235482	0.82[EUR][1000 genomes]
rs2243665	0.92[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2246334	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2247317	0.89[CEU][hapmap]
rs2247429	0.82[ASN][1000 genomes]
rs2247666	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2249147	0.96[EUR][1000 genomes]
rs2249386	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2250387	0.92[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2253194	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.98[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2253648	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253757	0.95[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2253880	0.90[EUR][1000 genomes]
rs2253886	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2253887	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2254257	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2254283	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2254288	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2256998	0.88[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2265468	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265469	0.80[EUR][1000 genomes]
rs2265471	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs2265472	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2265474	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs2265915	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265916	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2265917	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs2265918	0.80[EUR][1000 genomes]
rs2265919	0.92[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs2328704	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs2328707	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2328709	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485631	0.95[JPT][hapmap]
rs2485632	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2748502	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs2777477	0.89[CEU][hapmap]
rs2814874	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs2814875	0.89[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap]
rs2814877	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2814879	0.90[EUR][1000 genomes]
rs2814880	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs3811102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923579	0.81[ASN][1000 genomes]
rs3924498	0.81[ASN][1000 genomes]
rs3924499	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.81[ASN][1000 genomes]
rs3924502	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4075694	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4075695	0.89[CEU][hapmap]
rs4243478	0.89[CEU][hapmap]
rs4280983	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4360151	0.92[CEU][hapmap]
rs4455694	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895683	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895684	0.95[EUR][1000 genomes]
rs4896831	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs4896832	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4896833	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4896837	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes]
rs4896839	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896841	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896842	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896843	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896844	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55810423	0.82[EUR][1000 genomes]
rs57700188	0.83[EUR][1000 genomes]
rs62433835	0.80[EUR][1000 genomes]
rs62435775	0.80[ASN][1000 genomes]
rs62435810	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570701	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6570703	0.95[CEU][hapmap];0.80[CHB][hapmap]
rs6570705	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs6570708	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs6570713	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570715	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570716	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570717	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570719	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs6570724	0.96[EUR][1000 genomes]
rs6570732	0.93[JPT][hapmap]
rs6900175	0.89[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902913	0.95[EUR][1000 genomes]
rs6906258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs6921073	0.98[EUR][1000 genomes]
rs6922507	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs6923545	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.81[ASN][1000 genomes]
rs6923678	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926076	0.91[CEU][hapmap]
rs6928007	0.94[EUR][1000 genomes]
rs6930154	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932863	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933161	0.94[EUR][1000 genomes]
rs6937661	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941429	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs697053	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs697054	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs697055	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs697056	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702304	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs702306	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs702307	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs702309	0.82[EUR][1000 genomes]
rs702314	0.87[EUR][1000 genomes]
rs702316	0.95[JPT][hapmap]
rs702317	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702318	1.00[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs702320	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702321	0.88[EUR][1000 genomes]
rs702322	0.95[JPT][hapmap]
rs702323	0.88[EUR][1000 genomes]
rs702324	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs735535	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs735536	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739735	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs7740785	0.87[EUR][1000 genomes]
rs7742333	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7744014	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs7752286	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7753092	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs7753273	0.95[JPT][hapmap]
rs7753696	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs7753770	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753833	0.88[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772717	0.82[EUR][1000 genomes]
rs857875	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs857877	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs857879	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857880	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857881	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs857882	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857883	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs864148	0.80[EUR][1000 genomes]
rs9285508	0.89[JPT][hapmap]
rs9373467	0.89[JPT][hapmap]
rs9373471	0.84[EUR][1000 genomes]
rs9373473	0.85[EUR][1000 genomes]
rs9373476	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9376955	0.89[CEU][hapmap]
rs9376956	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9376957	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs9376961	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376965	0.80[ASN][1000 genomes]
rs9376968	0.96[EUR][1000 genomes]
rs9376970	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]
rs9376971	0.92[CEU][hapmap]
rs9386128	0.91[EUR][1000 genomes]
rs9386131	0.95[EUR][1000 genomes]
rs9386132	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386133	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes]
rs9386134	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386136	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9386141	0.92[CEU][hapmap]
rs9390343	0.89[CEU][hapmap]
rs9390344	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs9390348	0.84[EUR][1000 genomes]
rs9390349	0.91[EUR][1000 genomes]
rs9390353	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9390354	0.95[EUR][1000 genomes]
rs9390355	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390356	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390357	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs9390358	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390365	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9399561	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs9399564	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399565	0.94[EUR][1000 genomes]
rs9399567	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403737	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9403739	0.96[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9403742	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403746	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403747	0.89[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs9403749	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs9403755	0.92[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap]
rs9403756	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap]
rs9403757	0.92[CEU][hapmap]
rs9485017	0.95[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs9485019	0.91[EUR][1000 genomes]
rs9485021	0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs9485024	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes]
rs9497380	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs9497395	0.96[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs9497396	0.88[EUR][1000 genomes]
rs9497398	0.84[EUR][1000 genomes]
rs9497401	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497403	0.89[JPT][hapmap]
rs9497406	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497419	0.99[EUR][1000 genomes]
rs9497424	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs9497425	0.92[CEU][hapmap]
rs9497426	0.83[JPT][hapmap]
rs9497427	0.92[CEU][hapmap]
rs9497431	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9497434	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap]
rs9791313	0.92[CEU][hapmap]
rs991507	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9373475	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs9373475	SHPRH	cis	parietal	SCAN
rs9373475	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
3	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
5	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:146116400-146126600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:146117400-146130400	Strong transcription	HSMM	muscle
10	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:146119400-146127600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
14	chr6:146119600-146127400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:146120200-146127600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:146120200-146127600	Strong transcription	Dnd41	blood
17	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:146121200-146127600	Strong transcription	Osteobl	bone
21	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
22	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:146121400-146135000	Weak transcription	Gastric	stomach
25	chr6:146121600-146127800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:146122200-146127400	Strong transcription	NHLF	lung
27	chr6:146122200-146127600	Strong transcription	Primary B cells from cord blood	blood
28	chr6:146122200-146127600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:146122200-146127600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:146122200-146127600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr6:146122200-146127600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:146122200-146127600	Strong transcription	HepG2	liver
33	chr6:146122200-146127800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:146122200-146128000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:146122200-146128600	Strong transcription	A549	lung
36	chr6:146122200-146129200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:146122400-146127400	Strong transcription	Adipose Nuclei	Adipose
39	chr6:146122400-146127400	Strong transcription	Fetal Muscle Leg	muscle
40	chr6:146122400-146127600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr6:146122400-146127600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:146122400-146127600	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr6:146122400-146128600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:146122600-146127600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:146122800-146127200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:146122800-146127400	Strong transcription	HSMMtube	muscle
48	chr6:146122800-146127600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:146122800-146127600	Strong transcription	Placenta	Placenta
50	chr6:146122800-146127800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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