Variant report

Variant	rs9403749
Chromosome Location	chr6:146162239-146162240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146162034..146165006-chr6:146165073..146167204,2	K562	blood:
2	chr6:146161591..146163305-chr6:146169579..146172257,2	MCF-7	breast:
3	chr6:146133961..146138994-chr6:146162007..146166567,6	K562	blood:
4	chr6:146158963..146161449-chr6:146161903..146164839,3	K562	blood:
5	chr6:146160656..146162566-chr6:146164304..146167235,2	MCF-7	breast:
6	chr6:146133832..146137079-chr6:146162007..146165593,4	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 253 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:249)

rs_ID	r²[population]
rs1004752	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs1011596	0.93[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1011597	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10214925	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10223507	0.96[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs10447449	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1055212	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1062067	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1062068	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1070517	0.80[EUR][1000 genomes]
rs10872579	0.96[CEU][hapmap]
rs10872580	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11155438	0.80[EUR][1000 genomes]
rs11155442	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1133832	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs11760	0.84[EUR][1000 genomes]
rs11965018	0.88[EUR][1000 genomes]
rs12190966	0.97[EUR][1000 genomes]
rs12199362	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1292333	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1292334	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs1292336	0.93[CEU][hapmap]
rs1292337	0.93[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap]
rs1292339	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs13214277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1331634	0.93[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap]
rs1337839	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1337840	0.87[TSI][hapmap]
rs1337841	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13437042	0.91[EUR][1000 genomes]
rs1415744	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs1415746	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415747	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1569540	0.88[EUR][1000 genomes]
rs1577916	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1832362	1.00[CEU][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes]
rs1883365	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs1890171	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1986729	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050027	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064185	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2072911	0.83[EUR][1000 genomes]
rs2073287	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs2092263	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2142978	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs2142980	0.85[JPT][hapmap]
rs2142981	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142983	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2224120	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2235481	0.82[YRI][hapmap]
rs2243665	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2246334	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2247206	0.83[EUR][1000 genomes]
rs2247211	0.83[EUR][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2247429	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2247666	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2249147	0.99[EUR][1000 genomes]
rs2249386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2250387	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2253194	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2253307	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2253648	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2253654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2253757	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs2253764	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs2253768	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2253880	0.93[EUR][1000 genomes]
rs2253886	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2253887	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2254257	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2254283	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs2254288	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs2256998	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs2265468	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2265469	0.83[EUR][1000 genomes]
rs2265471	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2265472	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2265474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap]
rs2265915	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2265916	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265917	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2265918	0.83[EUR][1000 genomes]
rs2265919	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2328704	0.85[CEU][hapmap]
rs2328707	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2328709	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2485631	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs2485632	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2748502	0.89[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap]
rs2777477	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs2814863	0.93[CEU][hapmap];0.93[GIH][hapmap];0.80[TSI][hapmap]
rs2814874	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2814875	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap]
rs2814877	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2814879	0.93[EUR][1000 genomes]
rs2814880	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs3811102	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3923579	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924498	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924499	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924502	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4075694	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4075695	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs4243478	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs4280983	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs4360151	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs4435956	0.80[EUR][1000 genomes]
rs4455694	0.88[EUR][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4895684	0.92[EUR][1000 genomes]
rs4896832	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4896833	0.92[CEU][hapmap]
rs4896837	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896838	0.96[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896839	0.88[EUR][1000 genomes]
rs4896841	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896842	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896843	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896844	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62435810	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570708	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6570713	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570715	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570716	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570717	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570719	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570723	1.00[CEU][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes]
rs6570724	0.99[EUR][1000 genomes]
rs6570732	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs6900175	0.81[JPT][hapmap]
rs6901888	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6902913	0.92[EUR][1000 genomes]
rs6906258	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6906402	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6915718	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917135	1.00[CEU][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes]
rs6921073	0.97[EUR][1000 genomes]
rs6922507	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6923545	0.92[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.87[ASN][1000 genomes]
rs6923678	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6926076	0.96[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs6928007	0.91[EUR][1000 genomes]
rs6930154	0.92[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6931553	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6932863	0.81[EUR][1000 genomes]
rs6933161	0.91[EUR][1000 genomes]
rs6937661	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941429	0.81[EUR][1000 genomes]
rs697053	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs697054	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs697055	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs697056	0.87[EUR][1000 genomes]
rs702304	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs702306	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs702307	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs702314	0.84[EUR][1000 genomes]
rs702316	0.85[JPT][hapmap]
rs702317	0.88[EUR][1000 genomes]
rs702318	0.96[CEU][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs702319	0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs702320	0.87[EUR][1000 genomes]
rs702321	0.85[EUR][1000 genomes]
rs702322	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs702323	0.85[EUR][1000 genomes]
rs702324	0.96[CEU][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs735535	0.86[EUR][1000 genomes]
rs735536	0.86[EUR][1000 genomes]
rs7739735	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7740785	0.90[EUR][1000 genomes]
rs7742333	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7744014	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7745696	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7752286	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753092	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7753273	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs7753696	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7753770	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7753833	0.91[EUR][1000 genomes]
rs7762562	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7772717	0.81[EUR][1000 genomes]
rs857875	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap]
rs857877	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs857879	0.93[CEU][hapmap]
rs857880	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs857881	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs857882	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs857883	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs863820	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs9373471	0.81[EUR][1000 genomes]
rs9373473	0.82[EUR][1000 genomes]
rs9373475	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373476	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376957	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs9376961	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376968	0.99[EUR][1000 genomes]
rs9376970	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9376971	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9386128	0.88[EUR][1000 genomes]
rs9386131	0.92[EUR][1000 genomes]
rs9386132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386133	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386134	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386136	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9386141	0.96[CEU][hapmap]
rs9390343	0.85[CEU][hapmap]
rs9390344	0.85[CEU][hapmap]
rs9390348	0.81[EUR][1000 genomes]
rs9390349	0.88[EUR][1000 genomes]
rs9390353	0.93[CHB][hapmap]
rs9390354	0.92[EUR][1000 genomes]
rs9390355	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390356	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9390357	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9390358	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390365	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399561	0.81[EUR][1000 genomes]
rs9399564	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399565	0.91[EUR][1000 genomes]
rs9399567	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403739	0.93[CEU][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs9403741	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs9403742	0.85[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs9403746	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403747	0.85[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9403750	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403755	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs9403756	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.86[ASN][1000 genomes]
rs9403757	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9485017	0.85[JPT][hapmap]
rs9485018	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9485019	0.87[EUR][1000 genomes]
rs9485021	0.88[EUR][1000 genomes]
rs9485024	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9497395	0.93[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs9497396	0.85[EUR][1000 genomes]
rs9497398	0.82[EUR][1000 genomes]
rs9497401	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497403	0.83[YRI][hapmap]
rs9497406	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497419	0.96[EUR][1000 genomes]
rs9497424	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs9497425	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9497427	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9497431	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9497434	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.82[ASN][1000 genomes]
rs9791313	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs991507	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3442707	chr6:146160559-146162982	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3370783	chr6:146160809-146162657	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9403749	SHPRH	cis	cerebellum	SCAN
rs9403749	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs9403749	SHPRH	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
4	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
5	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
6	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
7	chr6:146157600-146163200	Weak transcription	Brain Germinal Matrix	brain
8	chr6:146157800-146162800	Weak transcription	Gastric	stomach
9	chr6:146158000-146163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:146158200-146163600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:146158200-146163600	Weak transcription	HSMMtube	muscle
12	chr6:146158200-146163600	Weak transcription	Osteobl	bone
13	chr6:146158200-146164200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:146158200-146166000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:146158400-146163600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:146159200-146162400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:146159600-146162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:146159600-146171400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:146159800-146163600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:146160000-146162400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:146160400-146165800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:146160400-146171400	Weak transcription	Primary T cells from cord blood	blood
23	chr6:146160600-146163000	Weak transcription	Brain Substantia Nigra	brain
24	chr6:146160600-146163400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:146161000-146162400	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links