Variant report

Variant	rs2253307
Chromosome Location	chr6:146196181-146196182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146195474..146197660-chr6:146199765..146202378,2	MCF-7	breast:
2	chr6:146152448..146155093-chr6:146194869..146196693,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-3	chr6:146195888-146199214	NONHSAT115414

Extended variants
information (count: 225 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs1004752	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1011596	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1011597	0.92[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10214925	0.85[EUR][1000 genomes]
rs10223507	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs10223508	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10447449	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1055212	0.87[EUR][1000 genomes]
rs1062067	0.92[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1062068	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10872580	0.96[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs11155442	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1133832	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11760	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965018	0.84[EUR][1000 genomes]
rs12190966	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12199362	0.92[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13214277	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1331634	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs1337839	0.93[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1337840	0.94[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap]
rs1337841	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs13437042	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1415744	0.93[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1415746	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs1415747	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs1569540	0.84[EUR][1000 genomes]
rs1577916	0.87[EUR][1000 genomes]
rs1832362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883365	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1890171	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1986729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2050027	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2064185	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2073287	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2092263	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2142981	0.90[EUR][1000 genomes]
rs2142983	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2224120	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs2243665	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246334	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2247206	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2247211	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2247429	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2247666	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2249147	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2249386	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2250387	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253648	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253654	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2253764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253880	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253887	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254257	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2254283	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2254288	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256998	0.92[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265467	0.98[ASN][1000 genomes]
rs2265468	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2265469	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265471	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265474	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.99[ASN][1000 genomes]
rs2265915	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2265916	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265917	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265918	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265919	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328704	0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs2328707	0.86[EUR][1000 genomes]
rs2328709	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2485632	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492855	0.82[ASN][1000 genomes]
rs2748500	0.80[ASN][1000 genomes]
rs2748502	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2777477	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2814863	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap]
rs2814874	0.91[CEU][hapmap];0.90[JPT][hapmap]
rs2814875	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs2814877	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs2814879	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814880	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3811102	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3923579	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3924498	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3924499	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3924502	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4075694	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4075695	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4075696	0.92[ASN][1000 genomes]
rs4243478	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4280983	0.96[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs4314514	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4316025	0.97[ASN][1000 genomes]
rs4360151	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4391282	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4435956	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455694	0.84[EUR][1000 genomes]
rs4566902	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4895684	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896837	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896838	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896839	0.84[EUR][1000 genomes]
rs4896841	0.87[EUR][1000 genomes]
rs4896842	0.87[EUR][1000 genomes]
rs4896843	0.86[EUR][1000 genomes]
rs4896844	0.91[EUR][1000 genomes]
rs4896852	0.82[EUR][1000 genomes]
rs56181683	0.84[ASN][1000 genomes]
rs62435810	0.94[EUR][1000 genomes]
rs6570713	0.91[EUR][1000 genomes]
rs6570715	0.85[EUR][1000 genomes]
rs6570716	0.82[EUR][1000 genomes]
rs6570717	0.89[EUR][1000 genomes]
rs6570719	0.87[EUR][1000 genomes]
rs6570723	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570724	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6901888	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6902913	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906258	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6906402	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6910790	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915718	0.96[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs6917135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917482	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6921073	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922507	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6923545	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6923678	0.87[EUR][1000 genomes]
rs6924159	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6926076	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926657	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6928007	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6930154	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6931553	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6933161	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6937661	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs697054	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs697055	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs697056	0.83[EUR][1000 genomes]
rs702317	0.84[EUR][1000 genomes]
rs702318	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs702319	0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs702320	0.83[EUR][1000 genomes]
rs702321	0.81[EUR][1000 genomes]
rs702323	0.81[EUR][1000 genomes]
rs702324	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs735535	0.82[EUR][1000 genomes]
rs735536	0.82[EUR][1000 genomes]
rs7739735	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7740785	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744014	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7745696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747576	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752286	0.96[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs7753092	0.96[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753696	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7753770	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7753833	0.87[EUR][1000 genomes]
rs7762562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs863820	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs9373473	0.84[ASN][1000 genomes]
rs9373475	0.96[CEU][hapmap];0.98[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9373476	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376957	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs9376961	0.93[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs9376968	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376970	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376971	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386128	0.84[EUR][1000 genomes]
rs9386131	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386132	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9386133	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386134	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9386141	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390343	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9390344	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs9390349	0.84[EUR][1000 genomes]
rs9390354	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390355	0.88[EUR][1000 genomes]
rs9390356	0.96[CEU][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9390357	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390358	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390365	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9399564	0.87[EUR][1000 genomes]
rs9399565	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399567	0.95[EUR][1000 genomes]
rs9399569	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399571	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403739	0.93[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs9403741	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9403742	0.85[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs9403746	0.87[EUR][1000 genomes]
rs9403747	0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403749	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403755	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403756	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403757	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485018	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs9485019	0.83[EUR][1000 genomes]
rs9485021	0.88[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs9485024	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497395	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs9497396	0.81[EUR][1000 genomes]
rs9497401	0.87[EUR][1000 genomes]
rs9497406	0.86[EUR][1000 genomes]
rs9497419	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497424	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497425	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497427	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497431	0.96[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9497434	0.92[CEU][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9497435	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791313	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs991507	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2253307	SHPRH	cis	parietal	SCAN
rs2253307	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs2253307	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146182400-146196600	Weak transcription	Fetal Heart	heart
4	chr6:146185200-146212200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:146186800-146199400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:146188000-146196400	Weak transcription	Left Ventricle	heart
8	chr6:146188000-146196600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:146188000-146201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
11	chr6:146188400-146201200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:146188600-146196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:146188800-146209000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:146189200-146202400	Weak transcription	Thymus	Thymus
15	chr6:146189400-146201400	Weak transcription	Dnd41	blood
16	chr6:146189400-146202800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:146189400-146214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:146189600-146211800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:146193400-146207600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:146193800-146201600	Weak transcription	HSMM	muscle
21	chr6:146194000-146211800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:146194200-146202400	Weak transcription	Primary T cells from cord blood	blood
23	chr6:146194400-146197200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:146194800-146212400	Weak transcription	HUVEC	blood vessel
25	chr6:146195000-146209400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:146195200-146196200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:146195200-146196200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:146196000-146198200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:146196000-146199400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Variant report

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