Variant report

Variant	rs10223507
Chromosome Location	chr6:146285204-146285205
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10223508	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457792	0.80[EUR][1000 genomes]
rs10457793	0.80[EUR][1000 genomes]
rs10457794	0.80[EUR][1000 genomes]
rs10457795	0.80[EUR][1000 genomes]
rs1062067	0.96[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1062068	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs10872580	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap]
rs10872582	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872583	0.83[EUR][1000 genomes]
rs11155452	0.80[EUR][1000 genomes]
rs1133832	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755334	0.83[EUR][1000 genomes]
rs11760	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12194437	0.80[EUR][1000 genomes]
rs12199362	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap]
rs13198450	0.84[EUR][1000 genomes]
rs13204280	0.81[EUR][1000 genomes]
rs1331634	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap]
rs1331636	0.89[EUR][1000 genomes]
rs1331637	0.89[EUR][1000 genomes]
rs1331639	0.81[EUR][1000 genomes]
rs1331645	0.84[EUR][1000 genomes]
rs1412081	0.80[EUR][1000 genomes]
rs1474871	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1832362	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs2050027	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2073287	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2144477	0.82[EUR][1000 genomes]
rs2144478	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2207785	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2224120	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs2224121	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2243665	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2247206	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247211	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247317	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247429	0.91[EUR][1000 genomes]
rs2247666	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2249147	0.82[ASN][1000 genomes]
rs2249386	0.96[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2250387	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253194	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253648	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2253757	0.85[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253768	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253880	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253886	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253887	0.83[ASN][1000 genomes]
rs2254257	0.91[EUR][1000 genomes]
rs2254283	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2254288	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2256998	0.96[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265467	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2265468	0.92[EUR][1000 genomes]
rs2265469	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265471	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265472	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2265477	0.94[ASW][hapmap];0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265916	0.82[ASN][1000 genomes]
rs2265917	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265918	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265919	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2328712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2474356	0.90[EUR][1000 genomes]
rs2485631	0.85[JPT][hapmap]
rs2485632	0.83[ASN][1000 genomes]
rs2492855	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2748482	0.89[EUR][1000 genomes]
rs2748483	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2748484	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2748485	0.88[EUR][1000 genomes]
rs2748486	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2748487	0.81[EUR][1000 genomes]
rs2748499	0.90[EUR][1000 genomes]
rs2748500	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2748502	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2777474	0.91[ASN][1000 genomes]
rs2777476	0.89[EUR][1000 genomes]
rs2777477	0.96[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2777484	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814863	0.96[CEU][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs2814866	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814867	0.86[EUR][1000 genomes]
rs2814869	0.90[EUR][1000 genomes]
rs2814874	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2814875	0.96[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs2814876	0.90[EUR][1000 genomes]
rs2814877	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2814879	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814880	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2892453	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs3923579	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3924498	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3924499	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3924502	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4075694	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075695	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075696	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243478	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4280983	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4314514	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4316025	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4360151	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4391282	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4435956	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4566902	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895683	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4896852	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56181683	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6570732	0.81[JPT][hapmap]
rs6570736	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570738	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6900175	0.80[JPT][hapmap]
rs6906258	0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs6906402	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6908063	0.82[EUR][1000 genomes]
rs6910790	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913797	0.80[EUR][1000 genomes]
rs6914813	0.83[EUR][1000 genomes]
rs6915718	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]
rs6917135	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6917482	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922507	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6923545	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924159	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6926076	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6926657	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930975	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6934467	0.80[EUR][1000 genomes]
rs6938972	0.80[EUR][1000 genomes]
rs7739418	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739735	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs7740785	0.81[ASN][1000 genomes]
rs7742333	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs7744014	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs7745696	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7747576	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7753092	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs7753696	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7755440	0.84[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs854145	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863820	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs864390	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs866473	0.86[EUR][1000 genomes]
rs9322043	0.85[EUR][1000 genomes]
rs9322046	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322047	0.83[EUR][1000 genomes]
rs9322048	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs932522	0.84[EUR][1000 genomes]
rs9373475	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap]
rs9373476	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs9373485	0.82[EUR][1000 genomes]
rs9376968	0.82[ASN][1000 genomes]
rs9376970	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs9376971	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376975	0.85[EUR][1000 genomes]
rs9386133	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs9386136	0.85[JPT][hapmap]
rs9386141	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390353	0.80[CHB][hapmap]
rs9390356	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap]
rs9390357	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs9390358	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap]
rs9390365	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390377	0.84[EUR][1000 genomes]
rs9399569	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399571	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399573	0.81[EUR][1000 genomes]
rs9403747	0.81[CEU][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap]
rs9403749	0.96[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs9403750	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs9403755	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403756	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403757	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403764	0.84[EUR][1000 genomes]
rs9403765	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403767	0.81[EUR][1000 genomes]
rs9403768	0.80[EUR][1000 genomes]
rs9485024	0.88[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs9497424	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497425	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497427	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497431	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs9497434	0.96[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9497435	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs969694	0.83[EUR][1000 genomes]
rs9791313	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10223507	SHPRH	cis	parietal	SCAN
rs10223507	ULBP3	trans	parietal	SCAN
rs10223507	SHPRH	cis	cerebellum	SCAN
rs10223507	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146282600-146286400	Active TSS	GM12878-XiMat	blood
2	chr6:146283000-146286400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:146283400-146286200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:146283600-146286000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:146283600-146286000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:146283600-146286000	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:146283600-146286000	Active TSS	K562	blood
8	chr6:146283600-146286200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:146283600-146286200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:146283600-146286400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:146283800-146285400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:146283800-146286200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:146283800-146286200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:146283800-146286200	Active TSS	Aorta	Aorta
15	chr6:146283800-146286400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:146283800-146286400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:146283800-146286400	Active TSS	Psoas Muscle	Psoas
18	chr6:146284000-146285800	Active TSS	Fetal Muscle Leg	muscle
19	chr6:146284000-146286000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:146284000-146286000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:146284000-146286000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr6:146284000-146286200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:146284000-146286200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:146284000-146286200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr6:146284000-146286200	Active TSS	Right Atrium	heart
26	chr6:146284000-146286200	Active TSS	Stomach Smooth Muscle	stomach
27	chr6:146284000-146286200	Active TSS	A549	lung
28	chr6:146284000-146286200	Active TSS	Hela-S3	cervix
29	chr6:146284000-146286200	Active TSS	NHDF-Ad	bronchial
30	chr6:146284000-146286200	Active TSS	NHLF	lung
31	chr6:146284000-146286400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:146284000-146286400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:146284000-146286400	Active TSS	HMEC	breast
34	chr6:146284200-146285400	Bivalent/Poised TSS	HepG2	liver
35	chr6:146284200-146286000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:146284200-146286000	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr6:146284200-146286000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:146284200-146286000	Active TSS	Muscle Satellite Cultured Cells	--
39	chr6:146284200-146286000	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:146284200-146286000	Active TSS	Fetal Intestine Large	intestine
41	chr6:146284200-146286000	Active TSS	Fetal Stomach	stomach
42	chr6:146284200-146286000	Active TSS	Stomach Mucosa	stomach
43	chr6:146284200-146286000	Active TSS	Thymus	Thymus
44	chr6:146284200-146286200	Active TSS	H9 Cell Line	embryonic stem cell
45	chr6:146284200-146286200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:146284200-146286200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:146284200-146286200	Active TSS	Colonic Mucosa	Colon
48	chr6:146284200-146286200	Active TSS	Right Ventricle	heart
49	chr6:146284200-146286400	Active TSS	Ovary	ovary
50	chr6:146284200-146286400	Active TSS	HSMM	muscle

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