Variant report

Variant	rs2247666
Chromosome Location	chr6:146220409-146220410
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146220306..146222663-chr6:146235095..146237007,2	K562	blood:
2	chr6:146220104..146222683-chr6:146242186..146243850,2	K562	blood:

Extended variants
information (count: 217 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs1004752	0.89[CEU][hapmap]
rs1011596	0.89[CEU][hapmap];0.85[TSI][hapmap]
rs1011597	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10223507	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs10223508	0.92[EUR][1000 genomes]
rs10457792	0.80[AMR][1000 genomes]
rs10457793	0.82[AMR][1000 genomes]
rs10457794	0.82[AMR][1000 genomes]
rs10457795	0.80[AMR][1000 genomes]
rs1062067	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1062068	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872580	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs11155452	0.80[AMR][1000 genomes]
rs1133832	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755334	0.82[AMR][1000 genomes]
rs11760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12190966	0.81[EUR][1000 genomes]
rs12194437	0.82[AMR][1000 genomes]
rs12199362	0.85[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13198450	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1331634	0.96[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap]
rs1331636	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1331637	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1337840	0.80[TSI][hapmap]
rs1337841	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1412081	0.80[AMR][1000 genomes]
rs1415744	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs1415746	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs1415747	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1883365	0.89[CEU][hapmap]
rs1890171	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1986729	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2050027	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2064185	0.91[CEU][hapmap];0.89[JPT][hapmap]
rs2073287	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2092263	0.88[CEU][hapmap]
rs2142980	0.85[JPT][hapmap]
rs2142983	0.85[CEU][hapmap]
rs2144477	0.80[AMR][1000 genomes]
rs2207785	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2224120	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2224121	0.84[EUR][1000 genomes]
rs2243665	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2246334	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2247206	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2247211	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2247317	0.89[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2247429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249147	0.83[EUR][1000 genomes]
rs2249386	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2250387	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2253194	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2253307	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2253648	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs2253654	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253757	0.85[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2253880	0.87[EUR][1000 genomes]
rs2253886	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2253887	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2254257	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254283	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2254288	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2256998	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265467	0.90[EUR][1000 genomes]
rs2265468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265471	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265472	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265474	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2265915	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265916	0.83[EUR][1000 genomes]
rs2265917	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265918	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265919	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2328704	0.82[CEU][hapmap]
rs2328709	0.82[ASN][1000 genomes]
rs2328712	0.84[EUR][1000 genomes]
rs2474356	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485631	0.85[JPT][hapmap]
rs2485632	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2492855	0.83[EUR][1000 genomes]
rs2748482	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2748483	0.84[EUR][1000 genomes]
rs2748484	0.84[EUR][1000 genomes]
rs2748485	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2748499	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2748502	0.92[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs2777476	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2777477	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs2777484	0.84[EUR][1000 genomes]
rs2814863	0.96[CEU][hapmap];0.98[GIH][hapmap];0.87[TSI][hapmap]
rs2814866	0.84[EUR][1000 genomes]
rs2814867	0.83[EUR][1000 genomes]
rs2814869	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814874	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814875	0.85[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814876	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814877	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814879	0.87[EUR][1000 genomes]
rs2814880	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3923579	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924498	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4075694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075695	0.89[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs4075696	0.85[EUR][1000 genomes]
rs4243478	0.89[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs4280983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4314514	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4316025	0.87[EUR][1000 genomes]
rs4360151	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs4391282	0.93[EUR][1000 genomes]
rs4435956	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4566902	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4895683	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4896844	0.81[ASN][1000 genomes]
rs4896852	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56181683	0.86[EUR][1000 genomes]
rs62435810	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570713	0.81[ASN][1000 genomes]
rs6570715	0.81[ASN][1000 genomes]
rs6570717	0.81[ASN][1000 genomes]
rs6570719	0.81[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6570724	0.83[EUR][1000 genomes]
rs6570732	0.81[JPT][hapmap]
rs6570736	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6900175	0.81[JPT][hapmap]
rs6901888	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6906258	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6906402	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6910790	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6914813	0.80[AMR][1000 genomes]
rs6915718	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6917482	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6921073	0.81[EUR][1000 genomes]
rs6922507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6923545	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6924159	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6926076	1.00[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6926657	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6930154	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs6931553	0.82[ASN][1000 genomes]
rs6938972	0.80[AMR][1000 genomes]
rs7739418	0.81[EUR][1000 genomes]
rs7739735	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs7742333	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs7744014	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs7745696	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7747576	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752286	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs7753092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753273	0.85[JPT][hapmap]
rs7753696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753770	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7755440	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs854145	0.81[EUR][1000 genomes]
rs863820	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs864390	0.85[EUR][1000 genomes]
rs866473	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322043	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322047	0.81[AMR][1000 genomes]
rs932522	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373475	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9373476	0.92[CEU][hapmap]
rs9373485	0.81[AMR][1000 genomes]
rs9376961	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs9376968	0.83[EUR][1000 genomes]
rs9376970	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376971	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9376975	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386132	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9386133	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs9386134	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9386136	0.85[JPT][hapmap]
rs9386141	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9390353	0.87[CHB][hapmap]
rs9390355	0.81[ASN][1000 genomes]
rs9390356	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390357	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs9390358	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs9390365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390377	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9399567	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9399569	0.94[EUR][1000 genomes]
rs9399571	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403741	0.89[CEU][hapmap]
rs9403742	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs9403747	0.81[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap]
rs9403749	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs9403755	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403757	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403764	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403765	0.80[EUR][1000 genomes]
rs9485017	0.85[JPT][hapmap]
rs9485018	0.88[CEU][hapmap]
rs9485024	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs9497424	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9497425	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs9497427	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs9497431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497434	0.85[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497435	0.93[EUR][1000 genomes]
rs9791313	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2247666	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs2247666	SHPRH	cis	parietal	SCAN
rs2247666	ULBP3	trans	parietal	SCAN
rs2247666	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
2	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
3	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:146201200-146230400	Weak transcription	NHEK	skin
5	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
8	chr6:146210200-146231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:146210400-146221600	Weak transcription	Psoas Muscle	Psoas
10	chr6:146210400-146230400	Weak transcription	NH-A	brain
11	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
12	chr6:146211200-146224800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:146211600-146236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:146212800-146226000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:146213200-146221000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:146213800-146225000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:146213800-146230400	Weak transcription	HUVEC	blood vessel
18	chr6:146215000-146225800	Weak transcription	Placenta	Placenta
19	chr6:146215000-146242200	Weak transcription	Hela-S3	cervix
20	chr6:146215200-146224600	Weak transcription	HSMM	muscle
21	chr6:146215400-146222400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:146216400-146221000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:146216800-146224600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:146218000-146220600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:146218400-146220600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:146218400-146220600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:146218400-146220600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr6:146218400-146221000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr6:146218400-146221000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr6:146218400-146221800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:146218600-146220800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr6:146218800-146220800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:146219000-146220600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:146219000-146228000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:146219000-146228000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:146219200-146223800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:146219200-146224000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:146219200-146224400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:146219200-146224600	Weak transcription	Brain Anterior Caudate	brain
40	chr6:146219200-146224600	Weak transcription	NHLF	lung
41	chr6:146219200-146225000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:146219200-146226400	Weak transcription	Brain Angular Gyrus	brain
43	chr6:146219200-146226800	Weak transcription	Fetal Brain Female	brain
44	chr6:146219200-146227800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:146219200-146249200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:146219400-146224600	Weak transcription	Osteobl	bone
48	chr6:146219600-146222000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr6:146219600-146250600	Strong transcription	Dnd41	blood
50	chr6:146219800-146221200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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