Variant report

Variant	rs9399567
Chromosome Location	chr6:146147295-146147296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-9	chr6:146147121-146147411	NONHSAT115408

Extended variants
information (count: 260 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:258)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1011596	0.96[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs1011597	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214925	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10223507	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10447449	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1055212	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062067	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1062068	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1070517	0.81[EUR][1000 genomes]
rs1070519	0.80[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap]
rs10872580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155438	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11155442	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1133832	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11760	0.84[EUR][1000 genomes]
rs11965018	0.88[EUR][1000 genomes]
rs12190966	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12199362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292333	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1292334	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1292336	0.96[CEU][hapmap]
rs1292337	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1292339	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs13214277	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1337839	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1337840	0.81[JPT][hapmap]
rs1337841	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13437042	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1415744	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1415746	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415747	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1569540	0.89[EUR][1000 genomes]
rs1577916	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1883365	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1890171	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986729	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2050027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2072911	0.84[EUR][1000 genomes]
rs2092263	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2142978	0.95[JPT][hapmap]
rs2142980	0.95[JPT][hapmap]
rs2142981	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142983	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2224120	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2235481	0.89[JPT][hapmap]
rs2243665	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2246334	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247206	0.83[EUR][1000 genomes]
rs2247211	0.83[EUR][1000 genomes]
rs2247317	0.90[CEU][hapmap]
rs2247429	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2247666	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2249147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249386	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250387	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2253194	0.95[EUR][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2253648	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253757	0.95[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs2253880	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2253886	0.93[EUR][1000 genomes]
rs2253887	0.91[EUR][1000 genomes]
rs2254257	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2254283	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2254288	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2256998	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2265468	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2265469	0.83[EUR][1000 genomes]
rs2265471	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2265472	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2265474	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap]
rs2265915	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265916	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265917	0.92[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2265918	0.83[EUR][1000 genomes]
rs2265919	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2328704	0.90[CEU][hapmap]
rs2328707	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328709	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485631	0.95[JPT][hapmap]
rs2485632	0.97[EUR][1000 genomes]
rs2748502	0.85[CEU][hapmap]
rs2777477	0.89[CEU][hapmap]
rs2814874	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs2814875	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2814877	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2814879	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2814880	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs3811102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923579	0.81[EUR][1000 genomes]
rs3924499	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3924502	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs4075694	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4075695	0.90[CEU][hapmap]
rs4243478	0.90[CEU][hapmap]
rs4280983	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4360151	0.92[CEU][hapmap]
rs4455694	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895683	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895684	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4896831	0.89[CEU][hapmap]
rs4896832	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4896833	0.92[CEU][hapmap]
rs4896837	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896839	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896841	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896842	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896843	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896844	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896851	0.80[CEU][hapmap]
rs57700188	0.80[EUR][1000 genomes]
rs62435810	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570701	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6570703	0.95[CEU][hapmap]
rs6570705	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs6570708	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6570713	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570715	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570716	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570717	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570719	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570732	0.93[JPT][hapmap]
rs6900175	0.90[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6902913	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6906258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6915718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921073	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6922507	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs6923545	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6923678	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926076	0.92[CEU][hapmap]
rs6928007	0.92[EUR][1000 genomes]
rs6930154	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932863	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6933161	0.92[EUR][1000 genomes]
rs6937661	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941429	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs697053	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs697054	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs697055	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs697056	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702304	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs702306	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs702307	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs702314	0.84[EUR][1000 genomes]
rs702316	0.95[JPT][hapmap]
rs702317	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702318	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs702320	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702321	0.85[EUR][1000 genomes]
rs702322	0.95[JPT][hapmap]
rs702323	0.85[EUR][1000 genomes]
rs702324	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs735535	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs735536	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7739735	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7740785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7742333	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7744014	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752286	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753092	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7753273	0.95[JPT][hapmap]
rs7753696	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7753770	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7753833	0.91[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772717	0.81[EUR][1000 genomes]
rs857875	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857877	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857879	0.96[CEU][hapmap]
rs857880	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857881	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs857882	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs857883	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9285508	0.89[JPT][hapmap]
rs9373467	0.90[JPT][hapmap]
rs9373471	0.81[EUR][1000 genomes]
rs9373473	0.82[EUR][1000 genomes]
rs9373475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373476	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376955	0.89[CEU][hapmap]
rs9376956	0.96[CEU][hapmap]
rs9376957	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9376961	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376968	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9376970	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9376971	0.93[CEU][hapmap]
rs9386128	0.88[EUR][1000 genomes]
rs9386131	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9386132	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386133	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386134	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386136	0.95[JPT][hapmap]
rs9386141	0.93[CEU][hapmap]
rs9390343	0.89[CEU][hapmap]
rs9390344	0.89[CEU][hapmap]
rs9390348	0.82[EUR][1000 genomes]
rs9390349	0.88[EUR][1000 genomes]
rs9390353	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9390354	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9390355	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390357	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9390358	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390365	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9399561	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9399564	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399565	0.92[EUR][1000 genomes]
rs9403737	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9403739	0.96[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9403742	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9403746	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403747	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9403749	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403755	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9403756	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9403757	0.93[CEU][hapmap]
rs9485017	0.95[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9485019	0.88[EUR][1000 genomes]
rs9485021	0.88[EUR][1000 genomes]
rs9485024	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9497380	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9497395	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9497396	0.85[EUR][1000 genomes]
rs9497398	0.82[EUR][1000 genomes]
rs9497401	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497403	0.89[JPT][hapmap]
rs9497406	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497419	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9497424	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9497425	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs9497426	0.84[JPT][hapmap]
rs9497427	0.93[CEU][hapmap]
rs9497431	0.93[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9497434	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs9791313	0.93[CEU][hapmap]
rs991507	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9399567	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137000-146150200	Weak transcription	Aorta	Aorta
3	chr6:146137000-146150200	Weak transcription	Ovary	ovary
4	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:146137800-146150200	Weak transcription	Left Ventricle	heart
7	chr6:146137800-146152800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
9	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
10	chr6:146138000-146150000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
13	chr6:146146400-146149800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:146146600-146150200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:146147200-146147400	Enhancers	Esophagus	oesophagus

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