Variant report

Variant	rs9285508
Chromosome Location	chr6:146262697-146262698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146251809..146253737-chr6:146260630..146263129,2	K562	blood:
2	chr6:146258662..146262193-chr6:146262695..146265491,4	K562	blood:
3	chr6:146251395..146254928-chr6:146260270..146263448,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1011597	0.88[JPT][hapmap]
rs10872580	0.89[JPT][hapmap]
rs12199362	0.89[JPT][hapmap]
rs1415746	0.89[JPT][hapmap]
rs1415747	0.89[JPT][hapmap]
rs1884364	0.90[ASN][1000 genomes]
rs1890171	0.89[JPT][hapmap]
rs2050027	0.89[JPT][hapmap]
rs2064185	0.88[JPT][hapmap]
rs2142980	0.96[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2246132	0.83[ASN][1000 genomes]
rs2253757	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2265475	0.83[ASN][1000 genomes]
rs2485631	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2777485	0.90[ASN][1000 genomes]
rs34541797	0.87[ASN][1000 genomes]
rs3811102	0.89[JPT][hapmap]
rs4895683	0.89[JPT][hapmap]
rs6570732	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6900175	0.84[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs6906258	0.89[JPT][hapmap]
rs6906402	0.89[JPT][hapmap]
rs6912351	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915718	0.89[JPT][hapmap]
rs7746618	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752286	0.89[JPT][hapmap]
rs7753273	0.85[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7753770	0.89[JPT][hapmap]
rs9373475	0.89[JPT][hapmap]
rs9386136	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs9390353	0.88[JPT][hapmap]
rs9390356	0.89[JPT][hapmap]
rs9390374	0.88[ASN][1000 genomes]
rs9390378	0.81[ASN][1000 genomes]
rs9497426	0.92[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs960385	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
6	chr6:146220200-146268400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:146225200-146268600	Weak transcription	Stomach Mucosa	stomach
8	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:146226400-146268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:146226800-146270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:146227200-146268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:146230600-146270400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:146232000-146282800	Weak transcription	NHLF	lung
14	chr6:146233400-146268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:146240800-146263400	Weak transcription	NHEK	skin
17	chr6:146240800-146264400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:146241600-146271400	Weak transcription	HSMMtube	muscle
19	chr6:146244200-146270400	Weak transcription	Colonic Mucosa	Colon
20	chr6:146250800-146270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:146250800-146276400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:146251000-146276000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:146251000-146276200	Strong transcription	Primary B cells from cord blood	blood
24	chr6:146251200-146268600	Strong transcription	Liver	Liver
25	chr6:146251200-146276000	Strong transcription	Fetal Thymus	thymus
26	chr6:146251600-146270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:146251600-146276400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:146251600-146276600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:146251600-146276600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:146251800-146268400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:146252200-146273400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:146252200-146274600	Strong transcription	Placenta	Placenta
33	chr6:146252600-146266200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:146252800-146264200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:146252800-146266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:146253200-146266800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:146253400-146276400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:146253600-146276000	Strong transcription	Fetal Lung	lung
39	chr6:146253800-146263000	Weak transcription	Fetal Heart	heart
40	chr6:146254400-146263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:146255000-146270400	Weak transcription	Fetal Brain Male	brain
42	chr6:146255200-146263600	Weak transcription	HUVEC	blood vessel
43	chr6:146255800-146282000	Weak transcription	Right Ventricle	heart
44	chr6:146256600-146262800	Weak transcription	NH-A	brain
45	chr6:146256600-146264200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:146256600-146266000	Weak transcription	Osteobl	bone
47	chr6:146256600-146282000	Weak transcription	Lung	lung
48	chr6:146257400-146275800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:146257800-146270400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:146258000-146266800	Strong transcription	GM12878-XiMat	blood

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