Variant report

Variant	rs2265475
Chromosome Location	chr6:146183335-146183336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146181195..146184700-chr6:146185441..146188238,3	MCF-7	breast:
2	chr6:146183079..146185485-chr6:146188152..146189711,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1070518	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1890170	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1970306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142978	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142980	0.96[ASN][1000 genomes]
rs2206142	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223411	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2235481	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2246132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253757	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265470	0.81[ASN][1000 genomes]
rs2485631	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34541797	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896838	0.83[ASN][1000 genomes]
rs62435775	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570732	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6900175	0.85[ASN][1000 genomes]
rs6912351	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702316	0.84[ASN][1000 genomes]
rs702318	0.83[ASN][1000 genomes]
rs702319	0.83[ASN][1000 genomes]
rs702322	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702324	0.83[ASN][1000 genomes]
rs7746618	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7753273	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285508	0.83[ASN][1000 genomes]
rs9373467	0.82[EUR][1000 genomes]
rs9376965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403739	0.81[ASN][1000 genomes]
rs9485017	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497403	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146178200-146184200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:146181800-146187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:146182400-146186600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:146182400-146196600	Weak transcription	Fetal Heart	heart
7	chr6:146182600-146184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:146182600-146186600	Weak transcription	Aorta	Aorta
9	chr6:146182600-146187600	Weak transcription	Psoas Muscle	Psoas
10	chr6:146182800-146186400	Weak transcription	Brain Angular Gyrus	brain
11	chr6:146183200-146186000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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