Variant report

Variant	rs1890170
Chromosome Location	chr6:146071839-146071840
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146053890..146058201-chr6:146071369..146074205,4	K562	blood:
2	chr6:146071292..146072870-chr6:146131842..146134542,2	K562	blood:
3	chr6:146071338..146074051-chr6:146075852..146079781,4	K562	blood:
4	chr6:146055188..146058502-chr6:146065186..146072580,11	MCF-7	breast:
5	chr6:146071196..146072831-chr6:146275879..146277935,2	K562	blood:

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000146414	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1070518	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1970306	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142978	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2142980	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142981	0.80[ASN][1000 genomes]
rs2206142	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2223411	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2235481	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2246132	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253757	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265475	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2485631	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34541797	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs426371	0.81[ASN][1000 genomes]
rs4398765	0.84[ASN][1000 genomes]
rs4896838	0.88[ASN][1000 genomes]
rs62435775	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570732	0.85[ASN][1000 genomes]
rs6900175	0.87[ASN][1000 genomes]
rs702316	0.90[ASN][1000 genomes]
rs702318	0.88[ASN][1000 genomes]
rs702319	0.88[ASN][1000 genomes]
rs702322	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702324	0.88[ASN][1000 genomes]
rs7753273	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373467	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376951	0.81[ASN][1000 genomes]
rs9376965	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386136	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403725	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9403739	0.87[ASN][1000 genomes]
rs9485017	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497403	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146067400-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:146067600-146076600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146071200-146073800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:146071200-146074200	Weak transcription	HUVEC	blood vessel
5	chr6:146071200-146076400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:146071200-146076400	Weak transcription	HMEC	breast
7	chr6:146071200-146076400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:146071200-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:146071400-146073800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:146071400-146076600	Weak transcription	NHDF-Ad	bronchial
11	chr6:146071400-146076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:146071400-146076800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:146071400-146077000	Weak transcription	HSMM	muscle
14	chr6:146071600-146076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:146071600-146076400	Weak transcription	NHEK	skin
16	chr6:146071600-146076800	Weak transcription	NHLF	lung
17	chr6:146071800-146073600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:146071800-146076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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