Variant report

Variant	rs1070518
Chromosome Location	chr6:145999359-145999360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1070517	0.81[ASN][1000 genomes]
rs1070519	0.81[ASN][1000 genomes]
rs1280279	0.91[ASN][1000 genomes]
rs1890170	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1970306	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2142978	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142980	0.84[ASN][1000 genomes]
rs2206142	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2223411	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2235481	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2246132	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2265475	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2485631	0.80[EUR][1000 genomes]
rs367693	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs399502	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs403345	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs403956	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs426371	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4398765	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs441982	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs455001	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896838	0.90[ASN][1000 genomes]
rs62435775	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6941429	0.81[ASN][1000 genomes]
rs697053	0.81[ASN][1000 genomes]
rs702304	0.81[ASN][1000 genomes]
rs702306	0.81[ASN][1000 genomes]
rs702307	0.81[ASN][1000 genomes]
rs702316	0.92[ASN][1000 genomes]
rs702318	0.90[ASN][1000 genomes]
rs702319	0.90[ASN][1000 genomes]
rs702322	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs702324	0.90[ASN][1000 genomes]
rs719030	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753273	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7772717	0.81[ASN][1000 genomes]
rs857881	0.81[ASN][1000 genomes]
rs864148	0.81[ASN][1000 genomes]
rs9373467	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376951	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376965	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9386136	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399561	0.81[ASN][1000 genomes]
rs9403725	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403739	0.88[ASN][1000 genomes]
rs9485017	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497315	0.84[EUR][1000 genomes]
rs9497403	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407277	chr6:145998059-146002457	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
2	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145974200-146002800	Weak transcription	Liver	Liver
4	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
6	chr6:145982800-146003000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:145984400-146003000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:145987600-146003000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:145988200-146002800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:145988400-146003000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:145988400-146003000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:145988600-146002800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:145988600-146003000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:145988600-146003000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:145989800-146003000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:145990200-146003000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:145990600-146004400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:145990800-146002800	Weak transcription	Brain Anterior Caudate	brain
20	chr6:145991000-146003200	Weak transcription	Fetal Thymus	thymus
21	chr6:145991200-146002800	Weak transcription	Ovary	ovary
22	chr6:145991200-146003000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:145991200-146008800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:145991600-146002800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:145991800-146002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:145991800-146009200	Weak transcription	NHDF-Ad	bronchial
27	chr6:145992400-146003000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:145994200-146002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:145994600-146007000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:145994800-146002800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:145994800-146008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
33	chr6:145995200-146003000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:145995200-146004000	Weak transcription	Fetal Stomach	stomach
35	chr6:145995200-146006400	Weak transcription	Lung	lung
36	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
37	chr6:145995400-146003200	Weak transcription	Aorta	Aorta
38	chr6:145995600-146000400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:145998000-146003200	Weak transcription	Fetal Brain Male	brain
40	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
41	chr6:145999000-145999400	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr6:145999000-146001200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
44	chr6:145999200-145999600	ZNF genes & repeats	Fetal Intestine Large	intestine

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