Variant report

Variant	rs2223411
Chromosome Location	chr6:146028767-146028768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1070518	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1280279	0.83[ASN][1000 genomes]
rs1890170	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1970306	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2142978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142980	0.92[ASN][1000 genomes]
rs2206142	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2235481	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246132	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2253757	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2265475	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2485631	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34541797	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs403345	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs403956	0.83[AMR][1000 genomes]
rs426371	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4398765	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs441982	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs455001	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4896838	0.94[ASN][1000 genomes]
rs62435775	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6900175	0.81[ASN][1000 genomes]
rs6901888	0.81[ASN][1000 genomes]
rs6930154	0.81[ASN][1000 genomes]
rs702316	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs702318	0.94[ASN][1000 genomes]
rs702319	0.94[ASN][1000 genomes]
rs702322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702324	0.94[ASN][1000 genomes]
rs7753273	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373467	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376951	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376965	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386136	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403725	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403739	0.92[ASN][1000 genomes]
rs9485017	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497403	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs991507	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:146003800-146029600	Weak transcription	Ovary	ovary
5	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:146007400-146043800	Weak transcription	Liver	Liver
7	chr6:146011200-146029600	Weak transcription	Aorta	Aorta
8	chr6:146020200-146035000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:146020400-146029400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:146023200-146028800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
12	chr6:146027000-146029200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:146027000-146035800	Weak transcription	Thymus	Thymus
14	chr6:146027200-146028800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:146027200-146029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:146027200-146029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:146027200-146034400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:146027400-146029800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:146027600-146043400	Weak transcription	Psoas Muscle	Psoas
20	chr6:146027800-146029600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:146027800-146031400	Weak transcription	HSMMtube	muscle
22	chr6:146027800-146035000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:146028600-146028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach

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