Variant report

Variant	rs1970306
Chromosome Location	chr6:146154543-146154544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146152448..146155093-chr6:146194869..146196693,2	MCF-7	breast:
2	chr6:146142328..146146619-chr6:146150916..146155602,4	K562	blood:
3	chr6:146134017..146135880-chr6:146153560..146155544,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1070518	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1415746	0.80[ASN][1000 genomes]
rs1415747	0.80[ASN][1000 genomes]
rs1890170	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142978	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142980	0.99[ASN][1000 genomes]
rs2206142	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2223411	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2235481	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253757	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2265475	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485631	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34541797	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4398765	0.82[ASN][1000 genomes]
rs4896838	0.86[ASN][1000 genomes]
rs4896844	0.80[ASN][1000 genomes]
rs62435775	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570713	0.80[ASN][1000 genomes]
rs6570732	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6900175	0.88[ASN][1000 genomes]
rs6912351	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs702316	0.87[ASN][1000 genomes]
rs702318	0.86[ASN][1000 genomes]
rs702319	0.86[ASN][1000 genomes]
rs702322	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702324	0.86[ASN][1000 genomes]
rs7746618	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7752286	0.80[ASN][1000 genomes]
rs7753273	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373467	0.83[EUR][1000 genomes]
rs9376965	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403739	0.84[ASN][1000 genomes]
rs9485017	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497403	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
5	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
6	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
8	chr6:146150600-146155000	Weak transcription	Ovary	ovary
9	chr6:146150600-146163000	Weak transcription	Left Ventricle	heart
10	chr6:146150600-146171200	Weak transcription	Aorta	Aorta
11	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
12	chr6:146151600-146157200	Weak transcription	Osteobl	bone

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