Variant report

Variant	rs9373467
Chromosome Location	chr6:145955605-145955606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145817967..145818790-chr6:145955063..145955734,2	MCF-7	breast:
2	chr6:145812363..145812895-chr6:145954847..145955707,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1011597	0.90[JPT][hapmap]
rs1070518	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872580	0.90[JPT][hapmap]
rs11155438	0.90[JPT][hapmap]
rs12199362	0.90[JPT][hapmap];0.88[YRI][hapmap]
rs1280279	0.90[ASN][1000 genomes]
rs1292333	0.90[JPT][hapmap]
rs1292334	0.90[JPT][hapmap]
rs1337841	0.90[JPT][hapmap]
rs1415744	0.90[JPT][hapmap]
rs1415746	0.90[JPT][hapmap]
rs1415747	0.90[JPT][hapmap]
rs1890170	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1890171	0.90[JPT][hapmap]
rs1970306	0.83[EUR][1000 genomes]
rs2050027	0.90[JPT][hapmap]
rs2064185	0.89[JPT][hapmap]
rs2142978	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142980	0.89[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs2206142	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2223411	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2235481	0.96[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2246132	0.82[EUR][1000 genomes]
rs2265475	0.82[EUR][1000 genomes]
rs367693	0.84[EUR][1000 genomes]
rs3811102	0.90[JPT][hapmap];0.84[YRI][hapmap]
rs399502	0.83[EUR][1000 genomes]
rs403345	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs403956	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs426371	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4398765	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs441982	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs455001	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895683	0.90[JPT][hapmap]
rs4896832	0.90[JPT][hapmap]
rs4896837	0.90[JPT][hapmap]
rs4896838	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs62435775	0.84[EUR][1000 genomes]
rs6570701	0.90[JPT][hapmap]
rs6570708	0.90[JPT][hapmap]
rs6900175	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6901888	0.90[JPT][hapmap]
rs6906258	0.90[JPT][hapmap]
rs6906402	0.90[JPT][hapmap]
rs6915718	0.90[JPT][hapmap]
rs6930154	0.90[JPT][hapmap]
rs6941429	0.90[JPT][hapmap]
rs697053	0.90[JPT][hapmap]
rs697054	0.90[JPT][hapmap]
rs697055	0.90[JPT][hapmap]
rs702304	0.90[JPT][hapmap]
rs702306	0.90[JPT][hapmap]
rs702307	0.90[JPT][hapmap]
rs702316	0.89[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs702318	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs702319	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs702322	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702324	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs719030	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7752286	0.90[JPT][hapmap]
rs7753273	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753770	0.90[JPT][hapmap]
rs857875	0.90[JPT][hapmap]
rs857877	0.90[JPT][hapmap]
rs857880	0.90[JPT][hapmap]
rs857881	0.90[JPT][hapmap]
rs857882	0.90[JPT][hapmap]
rs857883	0.90[JPT][hapmap]
rs867056	0.83[EUR][1000 genomes]
rs9373475	0.89[JPT][hapmap]
rs9376951	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376961	0.90[JPT][hapmap]
rs9376965	0.84[EUR][1000 genomes]
rs9386136	0.83[EUR][1000 genomes]
rs9390356	0.90[JPT][hapmap]
rs9399561	0.90[JPT][hapmap]
rs9403725	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403737	0.90[JPT][hapmap]
rs9403739	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9403742	0.81[JPT][hapmap]
rs9485017	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497315	0.83[EUR][1000 genomes]
rs9497403	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933782	chr6:145946431-145956458	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145947000-145955800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:145948800-145962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:145949000-145956200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
6	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
7	chr6:145951000-145959000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
9	chr6:145951200-145955800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
12	chr6:145952600-145955800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:145953600-145958600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:145954600-145955800	Enhancers	Fetal Heart	heart
15	chr6:145955000-145955800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:145955000-145962400	Weak transcription	Psoas Muscle	Psoas
17	chr6:145955200-145955800	Enhancers	Brain Anterior Caudate	brain
18	chr6:145955200-145976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:145955400-145955800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr6:145955400-145955800	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr6:145955400-145955800	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:145955400-145955800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:145955400-145955800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:145955400-145955800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:145955400-145955800	Enhancers	Adipose Nuclei	Adipose
26	chr6:145955400-145955800	Enhancers	Spleen	Spleen
27	chr6:145955600-145955800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:145955600-145955800	Active TSS	Brain Angular Gyrus	brain
29	chr6:145955600-145955800	Enhancers	Colon Smooth Muscle	Colon
30	chr6:145955600-145955800	Enhancers	Fetal Thymus	thymus
31	chr6:145955600-145977400	Weak transcription	Left Ventricle	heart

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