Variant report

Variant	rs9376965
Chromosome Location	chr6:146130055-146130056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146129217..146132069-chr6:146270897..146273160,2	K562	blood:
2	chr6:146127456..146130857-chr6:146284369..146287201,3	K562	blood:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:146116668..146118837-chr6:146129546..146132090,2	MCF-7	breast:
5	chr6:146128343..146133564-chr6:146134211..146137578,9	MCF-7	breast:
6	chr6:146128264..146131082-chr6:146176752..146178262,2	K562	blood:
7	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
8	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146414	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1070518	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872580	0.80[ASN][1000 genomes]
rs12199362	0.80[ASN][1000 genomes]
rs1415746	0.81[ASN][1000 genomes]
rs1415747	0.81[ASN][1000 genomes]
rs1890170	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1970306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2142978	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2142980	1.00[ASN][1000 genomes]
rs2206142	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2223411	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2235481	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246132	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253757	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2265475	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328709	0.80[ASN][1000 genomes]
rs2485631	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34541797	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3811102	0.80[ASN][1000 genomes]
rs4398765	0.83[ASN][1000 genomes]
rs4896838	0.86[ASN][1000 genomes]
rs4896844	0.81[ASN][1000 genomes]
rs62435775	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570713	0.81[ASN][1000 genomes]
rs6570732	0.87[ASN][1000 genomes]
rs6900175	0.89[ASN][1000 genomes]
rs6906258	0.80[ASN][1000 genomes]
rs6906402	0.80[ASN][1000 genomes]
rs6915718	0.80[ASN][1000 genomes]
rs6931553	0.80[ASN][1000 genomes]
rs702316	0.88[ASN][1000 genomes]
rs702318	0.86[ASN][1000 genomes]
rs702319	0.86[ASN][1000 genomes]
rs702322	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs702324	0.86[ASN][1000 genomes]
rs7752286	0.81[ASN][1000 genomes]
rs7753273	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373467	0.84[EUR][1000 genomes]
rs9373475	0.80[ASN][1000 genomes]
rs9386132	0.80[ASN][1000 genomes]
rs9386134	0.80[ASN][1000 genomes]
rs9386136	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390356	0.80[ASN][1000 genomes]
rs9403739	0.85[ASN][1000 genomes]
rs9485017	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497403	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
2	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
4	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:146117400-146130400	Strong transcription	HSMM	muscle
7	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
9	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
10	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:146121400-146135000	Weak transcription	Gastric	stomach
13	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:146125400-146134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:146125800-146133400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:146126200-146130800	Weak transcription	Psoas Muscle	Psoas
18	chr6:146126600-146133000	Weak transcription	Right Atrium	heart
19	chr6:146126600-146134400	Weak transcription	Right Ventricle	heart
20	chr6:146126800-146130600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:146127000-146133000	Weak transcription	Fetal Brain Male	brain
22	chr6:146127000-146133600	Weak transcription	Brain Germinal Matrix	brain
23	chr6:146127200-146134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:146127200-146134800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:146127400-146130400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:146127400-146130400	Weak transcription	Primary T cells from cord blood	blood
27	chr6:146127400-146130400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:146127400-146130400	Weak transcription	Fetal Lung	lung
29	chr6:146127400-146130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:146127400-146130400	Weak transcription	HMEC	breast
31	chr6:146127400-146130400	Weak transcription	HSMMtube	muscle
32	chr6:146127400-146130400	Weak transcription	NHLF	lung
33	chr6:146127400-146130600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:146127400-146130800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:146127400-146131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:146127400-146132000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:146127400-146132000	Weak transcription	Hela-S3	cervix
38	chr6:146127400-146132600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:146127400-146132600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:146127400-146132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:146127400-146133400	Weak transcription	Adipose Nuclei	Adipose
42	chr6:146127400-146133600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:146127400-146133600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:146127400-146133600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:146127400-146133600	Weak transcription	Aorta	Aorta
46	chr6:146127400-146133600	Weak transcription	Liver	Liver
47	chr6:146127400-146133600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:146127400-146134000	Weak transcription	Fetal Intestine Large	intestine
49	chr6:146127400-146134000	Weak transcription	Fetal Kidney	kidney
50	chr6:146127400-146134200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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