Variant report

Variant	rs4398765
Chromosome Location	chr6:145935006-145935007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145929886..145932871-chr6:145934961..145937093,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1004752	0.84[JPT][hapmap]
rs1011596	0.89[JPT][hapmap]
rs1011597	1.00[JPT][hapmap]
rs1045820	0.89[JPT][hapmap]
rs1070518	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155435	0.81[ASN][1000 genomes]
rs11155438	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12199362	1.00[JPT][hapmap]
rs12208019	0.81[ASN][1000 genomes]
rs1280279	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1292333	1.00[JPT][hapmap]
rs1292334	1.00[JPT][hapmap]
rs1292337	0.89[JPT][hapmap]
rs1292339	0.89[JPT][hapmap]
rs1337839	0.84[JPT][hapmap]
rs1337840	0.89[JPT][hapmap]
rs1337841	1.00[JPT][hapmap]
rs1415744	1.00[JPT][hapmap]
rs1415746	1.00[JPT][hapmap]
rs1415747	1.00[JPT][hapmap]
rs1890170	0.84[ASN][1000 genomes]
rs1890171	1.00[JPT][hapmap]
rs1970306	0.82[ASN][1000 genomes]
rs2050027	1.00[JPT][hapmap]
rs2064185	1.00[JPT][hapmap]
rs2096201	0.81[ASN][1000 genomes]
rs2142978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2142980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2206142	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223411	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2235481	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2328704	0.84[JPT][hapmap]
rs367693	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3811102	1.00[JPT][hapmap]
rs399502	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs403345	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs403956	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs426371	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs441982	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs455001	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895683	1.00[JPT][hapmap]
rs4896831	0.84[JPT][hapmap]
rs4896832	1.00[JPT][hapmap]
rs4896837	1.00[JPT][hapmap]
rs4896838	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs62435775	0.83[ASN][1000 genomes]
rs6570701	1.00[JPT][hapmap]
rs6570705	0.89[JPT][hapmap]
rs6570706	0.84[JPT][hapmap]
rs6570708	1.00[JPT][hapmap]
rs6900175	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs6901888	1.00[JPT][hapmap]
rs6906258	1.00[JPT][hapmap]
rs6906402	1.00[JPT][hapmap]
rs6915718	1.00[JPT][hapmap]
rs6930154	1.00[JPT][hapmap]
rs6941429	1.00[JPT][hapmap]
rs697053	1.00[JPT][hapmap]
rs697054	1.00[JPT][hapmap]
rs697055	1.00[JPT][hapmap]
rs702304	1.00[JPT][hapmap]
rs702306	1.00[JPT][hapmap]
rs702307	1.00[JPT][hapmap]
rs702316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs702318	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs702319	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs702322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702324	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs719030	0.81[AMR][1000 genomes]
rs7739735	0.89[JPT][hapmap]
rs7744014	0.89[JPT][hapmap]
rs7752286	1.00[JPT][hapmap]
rs7753273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753770	1.00[JPT][hapmap]
rs857875	1.00[JPT][hapmap]
rs857877	1.00[JPT][hapmap]
rs857879	0.84[JPT][hapmap]
rs857880	1.00[JPT][hapmap]
rs857881	1.00[JPT][hapmap]
rs857882	1.00[JPT][hapmap]
rs857883	1.00[JPT][hapmap]
rs867056	0.88[EUR][1000 genomes]
rs9373467	0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373475	1.00[JPT][hapmap]
rs9376951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376955	0.84[JPT][hapmap]
rs9376961	1.00[JPT][hapmap]
rs9376965	0.83[ASN][1000 genomes]
rs9386136	0.83[ASN][1000 genomes]
rs9390353	0.83[JPT][hapmap]
rs9390356	1.00[JPT][hapmap]
rs9390357	0.89[JPT][hapmap]
rs9399561	1.00[JPT][hapmap]
rs9403725	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403734	0.81[ASN][1000 genomes]
rs9403735	0.81[ASN][1000 genomes]
rs9403737	1.00[JPT][hapmap]
rs9403739	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9403742	0.94[JPT][hapmap]
rs9403747	0.88[JPT][hapmap]
rs9485017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9485021	0.84[JPT][hapmap]
rs9497315	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9497380	0.89[JPT][hapmap]
rs9497395	0.89[JPT][hapmap]
rs9497403	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145924400-145948200	Weak transcription	Left Ventricle	heart
2	chr6:145934200-145948000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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