Variant report

Variant	rs9390353
Chromosome Location	chr6:146105076-146105077
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1011597	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10223507	0.80[CHB][hapmap]
rs1062068	0.87[CHB][hapmap]
rs10872580	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11155438	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs12199362	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1292333	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1292334	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1337841	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1415744	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1415746	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1415747	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1890171	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs2050027	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2064185	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs2247666	0.87[CHB][hapmap]
rs2249386	0.82[CEU][hapmap];0.93[CHB][hapmap]
rs2253654	0.93[CHB][hapmap]
rs3811102	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3924499	0.87[CHB][hapmap]
rs3924502	0.87[CHB][hapmap]
rs4075694	0.87[CHB][hapmap]
rs4280983	0.87[CHB][hapmap]
rs4895683	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4896832	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs4896837	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6570701	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6570708	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6901888	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6906258	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap]
rs6906402	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6915718	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs6922507	0.86[CHB][hapmap]
rs6923545	0.81[CHB][hapmap]
rs6930154	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6941429	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs697053	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs697054	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs697055	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs702304	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs702306	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs702307	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs702318	0.82[CEU][hapmap]
rs702319	0.83[JPT][hapmap]
rs702324	0.82[CEU][hapmap]
rs7752286	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap]
rs7753092	0.87[CHB][hapmap]
rs7753696	0.87[CHB][hapmap]
rs7753770	0.93[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs857875	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs857877	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs857880	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs857881	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs857882	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs857883	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9285508	0.88[JPT][hapmap]
rs9373475	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9376961	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9376970	0.87[CHB][hapmap]
rs9386133	0.82[CEU][hapmap]
rs9390356	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9390358	0.82[CEU][hapmap]
rs9390365	0.87[CHB][hapmap]
rs9399561	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9403737	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9403742	1.00[CHB][hapmap]
rs9403749	0.93[CHB][hapmap]
rs9403756	0.87[CHB][hapmap]
rs9485024	0.82[CEU][hapmap]
rs9497426	0.83[JPT][hapmap]
rs9497431	0.87[CHB][hapmap]
rs9497434	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146096200-146105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:146099800-146106000	Weak transcription	Pancreas	Pancrea
3	chr6:146100000-146106000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
5	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:146101400-146105800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:146101400-146106000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:146101400-146109400	Weak transcription	Gastric	stomach
9	chr6:146101400-146110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:146101400-146110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:146101600-146106200	Weak transcription	Left Ventricle	heart
12	chr6:146101600-146110000	Weak transcription	Fetal Lung	lung
13	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:146102400-146105600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:146102400-146110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:146102800-146105800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:146102800-146105800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:146103000-146105800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:146103000-146105800	Weak transcription	Aorta	Aorta
20	chr6:146103000-146105800	Weak transcription	Ovary	ovary
21	chr6:146103000-146105800	Weak transcription	HSMM	muscle
22	chr6:146103000-146106200	Weak transcription	HSMMtube	muscle
23	chr6:146103000-146109200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:146103200-146105600	Weak transcription	Brain Germinal Matrix	brain
26	chr6:146103200-146106000	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:146103400-146105800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:146103400-146107600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:146103800-146109400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:146104000-146105800	Weak transcription	Fetal Stomach	stomach
31	chr6:146104000-146106200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:146104200-146105600	Weak transcription	Fetal Brain Female	brain
33	chr6:146104200-146105800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:146104400-146106000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:146104600-146106000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:146104600-146106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:146104600-146106200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:146104600-146106200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:146104600-146106200	Enhancers	Dnd41	blood
41	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:146104800-146108200	Weak transcription	HepG2	liver
44	chr6:146104800-146109600	Weak transcription	Brain Angular Gyrus	brain
45	chr6:146104800-146110200	Weak transcription	Spleen	Spleen
46	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
48	chr6:146105000-146105200	Enhancers	Thymus	Thymus
49	chr6:146105000-146105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:146105000-146105800	Weak transcription	Brain Substantia Nigra	brain

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