Variant report

Variant	rs9390358
Chromosome Location	chr6:146145678-146145679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146141313..146146704-chr6:146148816..146153932,6	K562	blood:
2	chr6:146142328..146146619-chr6:146150916..146155602,4	K562	blood:
3	chr6:146139809..146142645-chr6:146144083..146147195,5	K562	blood:
4	chr6:146145116..146146704-chr6:146148401..146150316,2	K562	blood:
5	chr6:146134693..146137085-chr6:146143470..146146468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 255 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1011596	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1011597	0.96[CEU][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs10214925	0.91[EUR][1000 genomes]
rs10223507	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap]
rs10447449	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1055212	0.94[EUR][1000 genomes]
rs1062067	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1062068	0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs1070517	0.83[EUR][1000 genomes]
rs1070519	0.82[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10872580	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11155438	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs11155442	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133832	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11760	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11965018	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12190966	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199362	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1292333	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1292334	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs1292336	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1292337	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs1292339	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs13214277	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1337839	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1337840	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1337841	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs13437042	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415744	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1415746	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1415747	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1569540	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1577916	0.94[EUR][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1883365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1890171	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs1986729	0.94[EUR][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs2072911	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2092262	0.88[ASN][1000 genomes]
rs2092263	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2142981	0.97[EUR][1000 genomes]
rs2142983	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2224120	0.89[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap]
rs2235482	0.81[EUR][1000 genomes]
rs2243665	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2246334	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2247206	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247211	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247317	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2247666	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2249147	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2249386	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2250387	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253194	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253648	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2253764	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2253880	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2253886	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253887	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2254257	0.82[EUR][1000 genomes]
rs2254283	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2254288	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2256998	0.88[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265467	0.84[ASN][1000 genomes]
rs2265468	0.81[EUR][1000 genomes]
rs2265469	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265471	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265472	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265474	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.86[ASN][1000 genomes]
rs2265915	0.94[EUR][1000 genomes]
rs2265916	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2265917	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265918	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265919	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2328704	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2328707	0.93[EUR][1000 genomes]
rs2328709	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2485632	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2748502	0.85[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs2777477	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs2814874	0.87[CEU][hapmap]
rs2814875	0.89[CEU][hapmap];0.93[GIH][hapmap]
rs2814877	0.89[CEU][hapmap]
rs2814879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814880	0.91[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3811102	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3924499	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs3924502	0.92[CEU][hapmap]
rs4075694	0.92[CEU][hapmap]
rs4075695	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4243478	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4280983	0.92[CEU][hapmap]
rs4316025	0.83[ASN][1000 genomes]
rs4360151	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4435956	0.84[ASN][1000 genomes]
rs4455694	0.90[EUR][1000 genomes]
rs4566902	0.84[ASN][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895684	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896831	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4896832	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4896833	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4896837	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4896839	0.90[EUR][1000 genomes]
rs4896841	0.94[EUR][1000 genomes]
rs4896842	0.93[EUR][1000 genomes]
rs4896843	0.93[EUR][1000 genomes]
rs4896844	0.98[EUR][1000 genomes]
rs55810423	0.81[EUR][1000 genomes]
rs57700188	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62433835	0.88[ASN][1000 genomes]
rs62435810	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6570701	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs6570703	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6570705	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs6570706	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6570708	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs6570713	0.98[EUR][1000 genomes]
rs6570715	0.91[EUR][1000 genomes]
rs6570716	0.89[EUR][1000 genomes]
rs6570717	0.96[EUR][1000 genomes]
rs6570719	0.94[EUR][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570724	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570732	0.81[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs6902913	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906258	1.00[CEU][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes]
rs6906402	1.00[CEU][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes]
rs6915718	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917482	0.84[ASN][1000 genomes]
rs6921073	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922507	0.92[CEU][hapmap]
rs6923545	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs6923678	0.94[EUR][1000 genomes]
rs6926076	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6928007	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930154	0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6932863	0.83[EUR][1000 genomes]
rs6933161	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937661	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6941429	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs697053	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs697054	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs697055	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs697056	0.89[EUR][1000 genomes]
rs702304	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs702306	0.96[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs702307	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs702309	0.81[EUR][1000 genomes]
rs702314	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702317	0.90[EUR][1000 genomes]
rs702318	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs702320	0.89[EUR][1000 genomes]
rs702321	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702323	0.87[EUR][1000 genomes]
rs702324	1.00[CEU][hapmap];0.81[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs735535	0.88[EUR][1000 genomes]
rs735536	0.88[EUR][1000 genomes]
rs7739735	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740785	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7742333	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7744014	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7752286	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs7753092	0.92[CEU][hapmap]
rs7753696	0.92[CEU][hapmap]
rs7753770	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs7753833	0.89[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772717	0.81[EUR][1000 genomes]
rs857875	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs857877	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs857879	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857880	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857881	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs857882	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857883	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9373471	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373473	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373475	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9373476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376955	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9376956	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376957	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376961	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs9376968	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376970	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs9376971	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9386128	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386131	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386132	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9386133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386134	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9386141	0.92[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9390343	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9390344	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9390348	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9390349	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390353	0.82[CEU][hapmap]
rs9390354	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390355	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390356	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390365	0.92[CEU][hapmap]
rs9399561	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs9399564	0.94[EUR][1000 genomes]
rs9399565	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9399569	0.83[ASN][1000 genomes]
rs9403737	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9403739	0.96[CEU][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403742	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs9403746	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403747	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403749	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403755	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.84[ASN][1000 genomes]
rs9403756	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs9403757	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9485019	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9485021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497380	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs9497395	0.96[CEU][hapmap];0.88[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs9497396	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497398	0.84[EUR][1000 genomes]
rs9497401	0.94[EUR][1000 genomes]
rs9497406	0.93[EUR][1000 genomes]
rs9497419	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497424	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9497425	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9497427	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9497431	0.92[CEU][hapmap]
rs9497434	0.88[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs9791313	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs991507	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9390358	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs9390358	SHPRH	cis	cerebellum	SCAN
rs9390358	SHPRH	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146136800-146165200	Weak transcription	Lung	lung
2	chr6:146137000-146147200	Weak transcription	Esophagus	oesophagus
3	chr6:146137000-146150200	Weak transcription	Aorta	Aorta
4	chr6:146137000-146150200	Weak transcription	Ovary	ovary
5	chr6:146137200-146146800	Weak transcription	HSMM	muscle
6	chr6:146137400-146146400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:146137400-146167200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:146137600-146156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:146137800-146150200	Weak transcription	Left Ventricle	heart
10	chr6:146137800-146152800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:146137800-146159600	Weak transcription	Psoas Muscle	Psoas
12	chr6:146137800-146163000	Weak transcription	Fetal Stomach	stomach
13	chr6:146138000-146150000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:146138000-146157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:146140000-146157200	Weak transcription	HSMMtube	muscle
16	chr6:146144600-146146600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:146145000-146146200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:146145200-146145800	Enhancers	Fetal Muscle Leg	muscle
19	chr6:146145200-146146400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Variant report

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