Variant report

Variant	rs6570716
Chromosome Location	chr6:146083938-146083939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146077264..146080093-chr6:146082462..146084742,2	K562	blood:
2	chr6:146075333..146076897-chr6:146083463..146085430,2	K562	blood:
3	chr6:146082657..146084474-chr6:146130198..146131949,2	K562	blood:
4	chr6:146081993..146084168-chr6:146132441..146134166,2	MCF-7	breast:
5	chr6:146077433..146080093-chr6:146081653..146083962,2	K562	blood:

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs1004752	0.82[EUR][1000 genomes]
rs1011596	0.86[EUR][1000 genomes]
rs1011597	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10214925	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10447449	0.90[EUR][1000 genomes]
rs1055212	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872580	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155442	0.90[EUR][1000 genomes]
rs11965018	0.84[EUR][1000 genomes]
rs12190966	0.89[EUR][1000 genomes]
rs12199362	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13214277	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1337839	0.81[EUR][1000 genomes]
rs1337841	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13437042	0.86[EUR][1000 genomes]
rs1415744	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1415746	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1415747	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1569540	0.84[EUR][1000 genomes]
rs1577916	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1832362	0.87[EUR][1000 genomes]
rs1883365	0.87[EUR][1000 genomes]
rs1890171	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1986729	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2050027	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2064185	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2092263	0.82[EUR][1000 genomes]
rs2142981	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2142983	0.84[EUR][1000 genomes]
rs2246334	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2249147	0.87[EUR][1000 genomes]
rs2249386	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253194	0.82[EUR][1000 genomes]
rs2253307	0.82[EUR][1000 genomes]
rs2253654	0.81[EUR][1000 genomes]
rs2253764	0.81[EUR][1000 genomes]
rs2253768	0.82[EUR][1000 genomes]
rs2253880	0.81[EUR][1000 genomes]
rs2253886	0.81[EUR][1000 genomes]
rs2265474	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2265915	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2265916	0.87[EUR][1000 genomes]
rs2328707	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2328709	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485632	0.84[EUR][1000 genomes]
rs2814879	0.81[EUR][1000 genomes]
rs3811102	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4455694	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4895683	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895684	0.86[EUR][1000 genomes]
rs4896837	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896838	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4896839	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896841	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896842	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896843	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896844	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62435810	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570713	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570715	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570717	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570719	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570723	0.87[EUR][1000 genomes]
rs6570724	0.87[EUR][1000 genomes]
rs6901888	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6902913	0.86[EUR][1000 genomes]
rs6906258	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6906402	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6915718	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917135	0.87[EUR][1000 genomes]
rs6921073	0.89[EUR][1000 genomes]
rs6923678	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6928007	0.87[EUR][1000 genomes]
rs6930154	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6931553	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932863	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6933161	0.87[EUR][1000 genomes]
rs6937661	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs697054	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs697055	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs697056	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs702314	0.80[EUR][1000 genomes]
rs702317	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702318	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs702319	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs702320	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702321	0.81[EUR][1000 genomes]
rs702323	0.81[EUR][1000 genomes]
rs702324	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs735535	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs735536	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739735	0.86[EUR][1000 genomes]
rs7742333	0.86[EUR][1000 genomes]
rs7744014	0.86[EUR][1000 genomes]
rs7745696	0.87[EUR][1000 genomes]
rs7752286	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753770	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762562	0.87[EUR][1000 genomes]
rs9373475	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373476	0.90[EUR][1000 genomes]
rs9376957	0.81[EUR][1000 genomes]
rs9376961	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376968	0.87[EUR][1000 genomes]
rs9386128	0.84[EUR][1000 genomes]
rs9386131	0.86[EUR][1000 genomes]
rs9386132	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386133	0.90[EUR][1000 genomes]
rs9386134	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390348	0.80[EUR][1000 genomes]
rs9390349	0.84[EUR][1000 genomes]
rs9390354	0.86[EUR][1000 genomes]
rs9390355	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390356	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390357	0.82[EUR][1000 genomes]
rs9390358	0.89[EUR][1000 genomes]
rs9399564	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399565	0.87[EUR][1000 genomes]
rs9399567	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403739	0.81[EUR][1000 genomes]
rs9403741	0.82[EUR][1000 genomes]
rs9403742	0.86[ASN][1000 genomes]
rs9403746	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403747	0.86[EUR][1000 genomes]
rs9403749	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403750	0.86[EUR][1000 genomes]
rs9485018	0.81[EUR][1000 genomes]
rs9485019	0.83[EUR][1000 genomes]
rs9485021	0.84[EUR][1000 genomes]
rs9485024	0.90[EUR][1000 genomes]
rs9497395	0.81[EUR][1000 genomes]
rs9497396	0.81[EUR][1000 genomes]
rs9497398	0.81[EUR][1000 genomes]
rs9497401	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497406	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497419	0.90[EUR][1000 genomes]
rs991507	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6570716	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146080000-146084200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links