Variant report

Variant	rs6932863
Chromosome Location	chr6:146021255-146021256
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146021020..146022840-chr6:146050602..146052412,2	K562	blood:

Extended variants
information (count: 251 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:250)

rs_ID	r²[population]
rs1004752	0.87[EUR][1000 genomes]
rs1011596	0.82[EUR][1000 genomes]
rs1011597	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10214925	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10447449	0.84[EUR][1000 genomes]
rs1045820	0.80[EUR][1000 genomes]
rs1055212	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1070517	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1070519	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1070520	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10872577	0.82[ASN][1000 genomes]
rs10872579	0.80[EUR][1000 genomes]
rs10872580	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155433	0.87[AMR][1000 genomes]
rs11155435	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11155438	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155442	0.84[EUR][1000 genomes]
rs11965018	0.85[EUR][1000 genomes]
rs12190966	0.83[EUR][1000 genomes]
rs12199362	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12205752	0.84[ASN][1000 genomes]
rs12208019	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12208812	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12211884	0.84[ASN][1000 genomes]
rs1280275	0.84[ASN][1000 genomes]
rs1280276	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1292333	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1292334	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1292336	0.80[EUR][1000 genomes]
rs1292337	0.80[EUR][1000 genomes]
rs13214277	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1337839	0.88[EUR][1000 genomes]
rs1337841	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13437042	0.82[EUR][1000 genomes]
rs1415744	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415746	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1415747	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569540	0.84[EUR][1000 genomes]
rs1577916	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1832362	0.81[EUR][1000 genomes]
rs1883365	0.82[EUR][1000 genomes]
rs1890171	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1912023	0.82[AMR][1000 genomes]
rs2050027	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2064185	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2092262	0.80[EUR][1000 genomes]
rs2092263	0.87[EUR][1000 genomes]
rs2092295	0.84[ASN][1000 genomes]
rs2092296	0.83[ASN][1000 genomes]
rs2092297	0.84[ASN][1000 genomes]
rs2096201	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2103633	0.84[ASN][1000 genomes]
rs2142981	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142983	0.84[EUR][1000 genomes]
rs2179323	0.80[EUR][1000 genomes]
rs2235482	0.80[EUR][1000 genomes]
rs2246334	0.80[EUR][1000 genomes]
rs2249147	0.81[EUR][1000 genomes]
rs2249386	0.81[EUR][1000 genomes]
rs2265474	0.81[EUR][1000 genomes]
rs2265916	0.81[EUR][1000 genomes]
rs2328704	0.81[EUR][1000 genomes]
rs2328707	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328709	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs365747	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs365869	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs367065	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs370112	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs370654	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs376257	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3811102	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs383841	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs385729	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs387376	0.82[AMR][1000 genomes]
rs392612	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs400329	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs401331	0.82[AMR][1000 genomes]
rs401561	0.82[AMR][1000 genomes]
rs405206	0.82[AMR][1000 genomes]
rs408443	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs411785	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs414600	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs418701	0.84[ASN][1000 genomes]
rs425999	0.82[AMR][1000 genomes]
rs427128	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4335004	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs434318	0.81[AMR][1000 genomes]
rs435671	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs436156	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs436498	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs437147	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs440477	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs443628	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4455694	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs446362	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs448258	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs450921	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs451108	0.82[AMR][1000 genomes]
rs451699	0.82[AMR][1000 genomes]
rs4895683	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895684	0.81[EUR][1000 genomes]
rs4896829	0.84[ASN][1000 genomes]
rs4896832	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896833	0.80[EUR][1000 genomes]
rs4896837	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896838	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896839	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896841	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896842	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896843	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896844	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55810423	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57700188	0.84[EUR][1000 genomes]
rs62433835	0.80[EUR][1000 genomes]
rs62435810	0.80[EUR][1000 genomes]
rs6570692	0.84[ASN][1000 genomes]
rs6570701	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570703	0.80[EUR][1000 genomes]
rs6570705	0.80[EUR][1000 genomes]
rs6570706	0.80[EUR][1000 genomes]
rs6570708	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570713	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570715	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570716	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6570717	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570719	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570723	0.81[EUR][1000 genomes]
rs6570724	0.81[EUR][1000 genomes]
rs6899702	0.83[ASN][1000 genomes]
rs6900040	0.84[ASN][1000 genomes]
rs6901888	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6902410	0.84[ASN][1000 genomes]
rs6902913	0.81[EUR][1000 genomes]
rs6906258	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906402	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6912079	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6913727	0.84[ASN][1000 genomes]
rs6915094	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6915718	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917135	0.81[EUR][1000 genomes]
rs6921073	0.83[EUR][1000 genomes]
rs6923074	0.84[ASN][1000 genomes]
rs6923678	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925594	0.84[ASN][1000 genomes]
rs6928007	0.82[EUR][1000 genomes]
rs6930154	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6931553	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933161	0.82[EUR][1000 genomes]
rs6937661	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6941429	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs697053	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs697054	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs697055	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs697056	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702304	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702305	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702306	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702307	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702309	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702314	0.87[EUR][1000 genomes]
rs702317	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702318	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702319	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702320	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702321	0.88[EUR][1000 genomes]
rs702323	0.88[EUR][1000 genomes]
rs702324	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs735535	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs735536	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739735	0.81[EUR][1000 genomes]
rs7742333	0.80[EUR][1000 genomes]
rs7744014	0.81[EUR][1000 genomes]
rs7745696	0.81[EUR][1000 genomes]
rs7746330	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7752286	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753770	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7755253	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7755586	0.86[AMR][1000 genomes]
rs7755887	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7756778	0.80[EUR][1000 genomes]
rs7762536	0.84[ASN][1000 genomes]
rs7762562	0.81[EUR][1000 genomes]
rs7772717	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7773939	0.84[ASN][1000 genomes]
rs857875	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs857877	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs857879	0.80[EUR][1000 genomes]
rs857880	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs857881	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs857882	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs857883	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs864148	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322028	0.83[ASN][1000 genomes]
rs9322029	0.84[ASN][1000 genomes]
rs9373463	0.84[ASN][1000 genomes]
rs9373471	0.83[EUR][1000 genomes]
rs9373475	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9373476	0.84[EUR][1000 genomes]
rs9376945	0.82[AMR][1000 genomes]
rs9376950	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376957	0.88[EUR][1000 genomes]
rs9376961	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9376968	0.81[EUR][1000 genomes]
rs9386128	0.85[EUR][1000 genomes]
rs9386131	0.81[EUR][1000 genomes]
rs9386132	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386133	0.84[EUR][1000 genomes]
rs9386134	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390336	0.83[ASN][1000 genomes]
rs9390338	0.83[ASN][1000 genomes]
rs9390343	0.82[EUR][1000 genomes]
rs9390344	0.81[EUR][1000 genomes]
rs9390348	0.84[EUR][1000 genomes]
rs9390349	0.85[EUR][1000 genomes]
rs9390354	0.81[EUR][1000 genomes]
rs9390355	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390356	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390358	0.83[EUR][1000 genomes]
rs9399553	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9399559	0.80[EUR][1000 genomes]
rs9399561	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399564	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399565	0.82[EUR][1000 genomes]
rs9399567	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403729	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9403730	0.84[ASN][1000 genomes]
rs9403734	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9403735	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9403737	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403739	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403741	0.87[EUR][1000 genomes]
rs9403742	0.90[ASN][1000 genomes]
rs9403746	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403747	0.81[EUR][1000 genomes]
rs9403749	0.81[EUR][1000 genomes]
rs9403750	0.80[EUR][1000 genomes]
rs9485018	0.86[EUR][1000 genomes]
rs9485019	0.85[EUR][1000 genomes]
rs9485021	0.83[EUR][1000 genomes]
rs9485024	0.84[EUR][1000 genomes]
rs9497357	0.87[AMR][1000 genomes]
rs9497380	0.80[EUR][1000 genomes]
rs9497395	0.88[EUR][1000 genomes]
rs9497396	0.88[EUR][1000 genomes]
rs9497398	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9497401	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497406	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497419	0.84[EUR][1000 genomes]
rs952406	0.84[ASN][1000 genomes]
rs991507	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6932863	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:146003800-146026600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:146003800-146029600	Weak transcription	Ovary	ovary
6	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:146007000-146022400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:146007400-146043800	Weak transcription	Liver	Liver
9	chr6:146009600-146022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:146011200-146029600	Weak transcription	Aorta	Aorta
11	chr6:146016000-146026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:146019400-146021400	Enhancers	NH-A	brain
13	chr6:146019800-146021400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:146019800-146021400	Enhancers	NHEK	skin
15	chr6:146019800-146022000	Enhancers	HUVEC	blood vessel
16	chr6:146020000-146021600	Enhancers	NHDF-Ad	bronchial
17	chr6:146020200-146035000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:146020400-146021400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:146020400-146029400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:146020600-146026600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:146020600-146026600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:146021000-146021800	Enhancers	A549	lung
23	chr6:146021000-146022000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:146021000-146026600	Weak transcription	HSMM	muscle
25	chr6:146021200-146026800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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