Variant report

Variant	rs2328709
Chromosome Location	chr6:146106819-146106820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146105593..146108141-chr6:146123626..146125725,2	K562	blood:

Extended variants
information (count: 265 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:264)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs1011596	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs1011597	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10214925	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10223507	0.92[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]
rs10447449	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1045820	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs1055212	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062067	0.89[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1062068	0.92[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1070517	0.84[EUR][1000 genomes]
rs1070519	0.83[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10872580	0.81[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155438	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11155442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1133832	0.92[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs11760	0.81[EUR][1000 genomes]
rs11965018	0.92[EUR][1000 genomes]
rs12190966	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12199362	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292333	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1292334	0.81[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs1292336	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1292337	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs1292339	0.89[CEU][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs13214277	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1337839	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1337840	0.81[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs1337841	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13437042	0.94[EUR][1000 genomes]
rs1415744	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415746	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415747	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569540	0.92[EUR][1000 genomes]
rs1577916	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1883365	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs1890171	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986729	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2072911	0.86[EUR][1000 genomes]
rs2092262	0.80[EUR][1000 genomes]
rs2092263	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs2142978	0.95[JPT][hapmap]
rs2142980	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2142981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142983	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2235481	0.89[JPT][hapmap]
rs2235482	0.82[EUR][1000 genomes]
rs2243665	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs2246334	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2247206	0.80[EUR][1000 genomes]
rs2247211	0.80[EUR][1000 genomes]
rs2247317	0.89[CEU][hapmap]
rs2247429	0.82[ASN][1000 genomes]
rs2247666	0.92[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs2249147	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2249386	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2250387	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2253194	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2253648	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253757	0.95[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2253880	0.90[EUR][1000 genomes]
rs2253886	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2253887	0.88[EUR][1000 genomes]
rs2254257	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2254283	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2254288	0.92[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2256998	0.88[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs2265468	0.82[ASN][1000 genomes]
rs2265471	0.92[CEU][hapmap]
rs2265472	0.95[CEU][hapmap]
rs2265474	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap]
rs2265915	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2265916	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2265917	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs2265919	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs2328704	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs2328707	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2485631	0.95[JPT][hapmap]
rs2485632	0.94[EUR][1000 genomes]
rs2748502	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs2777477	0.89[CEU][hapmap]
rs2814874	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs2814875	0.89[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap]
rs2814877	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2814879	0.90[EUR][1000 genomes]
rs2814880	0.91[CEU][hapmap]
rs3811102	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923579	0.81[ASN][1000 genomes]
rs3924498	0.81[ASN][1000 genomes]
rs3924499	0.92[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs3924502	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4075694	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4075695	0.89[CEU][hapmap]
rs4243478	0.89[CEU][hapmap]
rs4280983	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4360151	0.92[CEU][hapmap]
rs4455694	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895684	0.96[EUR][1000 genomes]
rs4896831	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs4896832	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4896833	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4896837	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs4896839	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896841	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896842	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896843	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896844	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55810423	0.82[EUR][1000 genomes]
rs57700188	0.83[EUR][1000 genomes]
rs62433835	0.80[EUR][1000 genomes]
rs62435775	0.80[ASN][1000 genomes]
rs62435810	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570701	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6570703	0.95[CEU][hapmap];0.80[JPT][hapmap]
rs6570705	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs6570708	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs6570713	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570715	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570716	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570717	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570719	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6570724	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6570732	0.93[JPT][hapmap]
rs6900175	0.90[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902913	0.96[EUR][1000 genomes]
rs6906258	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906402	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915718	0.87[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6921073	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6922507	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs6923545	0.92[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs6923678	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926076	0.91[CEU][hapmap]
rs6928007	0.95[EUR][1000 genomes]
rs6930154	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932863	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933161	0.95[EUR][1000 genomes]
rs6937661	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941429	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs697053	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs697054	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs697055	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs697056	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702304	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs702306	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs702307	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs702309	0.82[EUR][1000 genomes]
rs702314	0.87[EUR][1000 genomes]
rs702316	0.95[JPT][hapmap]
rs702317	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702318	0.93[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs702320	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702321	0.88[EUR][1000 genomes]
rs702322	0.95[JPT][hapmap]
rs702323	0.88[EUR][1000 genomes]
rs702324	0.81[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs735535	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs735536	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739735	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs7740785	0.87[EUR][1000 genomes]
rs7742333	0.81[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7744014	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7752286	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7753092	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs7753273	0.95[JPT][hapmap]
rs7753696	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs7753770	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753833	0.88[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7772717	0.82[EUR][1000 genomes]
rs857875	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs857877	0.81[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs857879	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857880	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs857881	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs857882	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs857883	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs864148	0.81[EUR][1000 genomes]
rs9285508	0.89[JPT][hapmap]
rs9373467	0.90[JPT][hapmap]
rs9373471	0.84[EUR][1000 genomes]
rs9373473	0.85[EUR][1000 genomes]
rs9373475	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373476	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9376955	0.89[CEU][hapmap]
rs9376956	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9376957	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs9376961	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376965	0.80[ASN][1000 genomes]
rs9376968	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376970	0.92[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.91[TSI][hapmap]
rs9376971	0.92[CEU][hapmap]
rs9386128	0.92[EUR][1000 genomes]
rs9386131	0.96[EUR][1000 genomes]
rs9386132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386133	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386134	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386136	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9386141	0.92[CEU][hapmap]
rs9390343	0.89[CEU][hapmap]
rs9390344	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs9390348	0.85[EUR][1000 genomes]
rs9390349	0.92[EUR][1000 genomes]
rs9390353	0.82[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs9390354	0.96[EUR][1000 genomes]
rs9390355	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390356	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390357	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs9390358	0.81[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9390365	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs9399561	0.81[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs9399564	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399565	0.95[EUR][1000 genomes]
rs9399567	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403737	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9403739	0.96[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9403742	0.89[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403746	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403747	0.89[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs9403749	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403755	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs9403756	0.92[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs9403757	0.92[CEU][hapmap]
rs9485017	0.95[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs9485019	0.91[EUR][1000 genomes]
rs9485021	0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs9485024	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497380	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs9497395	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9497396	0.88[EUR][1000 genomes]
rs9497398	0.85[EUR][1000 genomes]
rs9497401	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497403	0.89[JPT][hapmap]
rs9497406	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497424	0.92[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap]
rs9497425	0.92[CEU][hapmap]
rs9497426	0.84[JPT][hapmap]
rs9497427	0.92[CEU][hapmap]
rs9497431	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs9497434	0.88[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap]
rs9791313	0.92[CEU][hapmap]
rs991507	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2328709	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:146101400-146109400	Weak transcription	Gastric	stomach
4	chr6:146101400-146110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:146101400-146110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:146101600-146110000	Weak transcription	Fetal Lung	lung
7	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:146102400-146110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:146103000-146109200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:146103400-146107600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:146103800-146109400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:146104800-146108200	Weak transcription	HepG2	liver
17	chr6:146104800-146109600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:146104800-146110200	Weak transcription	Spleen	Spleen
19	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
21	chr6:146105000-146108200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
24	chr6:146105400-146108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:146105400-146112000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:146105600-146107000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr6:146105600-146107000	Strong transcription	Brain Germinal Matrix	brain
29	chr6:146105600-146107000	Strong transcription	Fetal Brain Female	brain
30	chr6:146105600-146107000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:146105600-146119000	Weak transcription	NH-A	brain
32	chr6:146105800-146107000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:146105800-146107000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:146105800-146107000	Strong transcription	Aorta	Aorta
35	chr6:146105800-146107000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:146105800-146107000	Strong transcription	Fetal Stomach	stomach
37	chr6:146105800-146107000	Strong transcription	Ovary	ovary
38	chr6:146105800-146107400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
40	chr6:146106000-146107000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr6:146106000-146107000	Strong transcription	Pancreas	Pancrea
42	chr6:146106000-146107000	Enhancers	Psoas Muscle	Psoas
43	chr6:146106000-146107000	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:146106200-146107000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:146106200-146107000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:146106200-146107000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:146106200-146107000	Enhancers	Esophagus	oesophagus
49	chr6:146106200-146108400	Weak transcription	HSMM	muscle
50	chr6:146106200-146110600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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