Variant report

Variant	rs6922507
Chromosome Location	chr6:146250155-146250156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:146250146-146250626	ECC-1	luminal epithelium:	n/a	chr6:146250365-146250384 chr6:146250366-146250380
2	RAD21	chr6:146250124-146250570	HepG2	liver:	n/a	chr6:146250365-146250384 chr6:146250366-146250380
3	SMC3	chr6:146250084-146250552	SK-N-SH	brain:	n/a	chr6:146250366-146250380
4	RAD21	chr6:146250122-146250672	HCT-116	colon:	n/a	chr6:146250365-146250384 chr6:146250366-146250380
5	CTCF	chr6:146250017-146250627	SK-N-SH	brain:	n/a	chr6:146250366-146250387 chr6:146250365-146250381 chr6:146250364-146250382
6	CTCF	chr6:146250109-146250636	HCT-116	colon:	n/a	chr6:146250366-146250387 chr6:146250365-146250381 chr6:146250364-146250382
7	RAD21	chr6:146250073-146250564	MCF-7	breast:	n/a	chr6:146250365-146250384 chr6:146250366-146250380
8	RAD21	chr6:146249992-146250784	SK-N-SH	brain:	n/a	chr6:146250365-146250384 chr6:146250366-146250380

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146244279..146247175-chr6:146249280..146252012,2	MCF-7	breast:
2	chr6:146238336..146240522-chr6:146248867..146251006,2	K562	blood:

Variant related genes	Relation type
SHPRH	TF binding region

Extended variants
information (count: 209 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs1011596	0.89[CEU][hapmap]
rs1011597	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10223507	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10223508	0.97[EUR][1000 genomes]
rs10457792	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10457793	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10457794	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10457795	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1062067	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1062068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10872580	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10872582	0.85[EUR][1000 genomes]
rs10872583	0.83[EUR][1000 genomes]
rs11155452	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1133832	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs11755334	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11760	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194437	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12199362	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs13198450	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13204280	0.80[EUR][1000 genomes]
rs1331634	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1331636	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331637	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331639	0.80[EUR][1000 genomes]
rs1331645	0.83[EUR][1000 genomes]
rs1337841	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1412081	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1415746	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1415747	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1474871	0.82[EUR][1000 genomes]
rs1832362	0.96[CEU][hapmap]
rs1883365	0.89[CEU][hapmap]
rs1890171	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1986729	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2050027	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2064185	0.91[CEU][hapmap];0.90[JPT][hapmap]
rs2073287	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2142980	0.86[JPT][hapmap]
rs2144477	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2144478	0.85[EUR][1000 genomes]
rs2207785	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2224120	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2224121	0.89[EUR][1000 genomes]
rs2243665	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2246334	0.88[ASN][1000 genomes]
rs2247206	0.94[EUR][1000 genomes]
rs2247211	0.94[EUR][1000 genomes]
rs2247317	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2247429	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2247666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249386	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2250387	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2253194	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2253648	0.86[CEU][hapmap]
rs2253654	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2253757	0.86[JPT][hapmap]
rs2253764	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2253880	0.82[EUR][1000 genomes]
rs2253886	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2253887	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2254257	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2254283	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2254288	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs2256998	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2265467	0.85[EUR][1000 genomes]
rs2265468	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2265469	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265471	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265472	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265474	0.88[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs2265915	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265917	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265918	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265919	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2328712	0.89[EUR][1000 genomes]
rs2474356	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2485631	0.86[JPT][hapmap]
rs2485632	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2492855	0.89[EUR][1000 genomes]
rs2748482	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2748483	0.89[EUR][1000 genomes]
rs2748484	0.89[EUR][1000 genomes]
rs2748485	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2748486	0.83[EUR][1000 genomes]
rs2748487	0.82[EUR][1000 genomes]
rs2748499	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2748500	0.81[EUR][1000 genomes]
rs2748502	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2777476	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2777477	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2777484	0.89[EUR][1000 genomes]
rs2814863	0.96[CEU][hapmap]
rs2814866	0.89[EUR][1000 genomes]
rs2814867	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2814869	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814874	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814875	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814876	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814877	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814879	0.82[EUR][1000 genomes]
rs2814880	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2892453	0.85[EUR][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3923579	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3924498	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3924499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3924502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4075695	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs4075696	0.90[EUR][1000 genomes]
rs4243478	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs4280983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4314514	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4316025	0.88[EUR][1000 genomes]
rs4360151	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4391282	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4435956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4566902	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4895683	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4896851	0.80[CEU][hapmap]
rs4896852	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56181683	0.91[EUR][1000 genomes]
rs62435810	0.86[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap]
rs6570732	0.82[JPT][hapmap]
rs6570736	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6570738	0.80[EUR][1000 genomes]
rs6900175	0.81[JPT][hapmap]
rs6906258	0.93[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6906402	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs6908063	0.82[EUR][1000 genomes]
rs6910790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6914813	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6915718	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs6917135	0.96[CEU][hapmap]
rs6917482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6923545	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924159	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926076	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6926657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930975	0.85[EUR][1000 genomes]
rs6934467	0.81[EUR][1000 genomes]
rs6938972	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7739418	0.86[EUR][1000 genomes]
rs7739735	0.89[CEU][hapmap]
rs7742333	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs7744014	0.89[CEU][hapmap]
rs7745696	0.96[CEU][hapmap]
rs7747576	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7752286	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7753092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753273	0.86[JPT][hapmap]
rs7753696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753770	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7755440	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7762562	0.96[CEU][hapmap]
rs854145	0.86[EUR][1000 genomes]
rs863820	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs864390	0.90[EUR][1000 genomes]
rs866473	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322043	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322046	0.84[EUR][1000 genomes]
rs9322047	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9322048	0.82[EUR][1000 genomes]
rs932522	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373475	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9373476	0.93[CEU][hapmap]
rs9373485	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9376970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376971	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9376975	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9386133	0.92[CEU][hapmap]
rs9386136	0.86[JPT][hapmap]
rs9386141	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390353	0.86[CHB][hapmap]
rs9390356	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9390357	0.89[CEU][hapmap]
rs9390358	0.92[CEU][hapmap]
rs9390365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9399569	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9399571	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9399573	0.81[EUR][1000 genomes]
rs9403742	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs9403747	0.81[CEU][hapmap]
rs9403749	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9403750	0.96[CEU][hapmap]
rs9403755	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403757	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403764	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403765	0.85[EUR][1000 genomes]
rs9403767	0.81[EUR][1000 genomes]
rs9403768	0.81[EUR][1000 genomes]
rs9485024	0.92[CEU][hapmap]
rs9497424	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9497425	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9497427	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9497431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497434	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497435	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs969694	0.83[EUR][1000 genomes]
rs9791313	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6922507	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:146219600-146250600	Strong transcription	Dnd41	blood
4	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146220000-146255200	Weak transcription	Gastric	stomach
6	chr6:146220000-146259400	Weak transcription	Esophagus	oesophagus
7	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
9	chr6:146220200-146268400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:146220400-146255200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:146224600-146257000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:146225200-146268600	Weak transcription	Stomach Mucosa	stomach
13	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:146226400-146268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:146226800-146270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:146227200-146268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:146230600-146270400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:146231800-146256000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:146232000-146262400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:146232000-146282800	Weak transcription	NHLF	lung
21	chr6:146232800-146255800	Weak transcription	Lung	lung
22	chr6:146233400-146255200	Weak transcription	Fetal Stomach	stomach
23	chr6:146233400-146255200	Weak transcription	Thymus	Thymus
24	chr6:146233400-146256000	Weak transcription	Pancreas	Pancrea
25	chr6:146233400-146261800	Weak transcription	Aorta	Aorta
26	chr6:146233400-146268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:146235800-146259600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:146237600-146255200	Weak transcription	A549	lung
30	chr6:146240800-146252600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:146240800-146255200	Weak transcription	Right Ventricle	heart
32	chr6:146240800-146262000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:146240800-146263400	Weak transcription	NHEK	skin
34	chr6:146240800-146264400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:146241000-146253400	Weak transcription	Fetal Heart	heart
36	chr6:146241400-146255000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:146241600-146253800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:146241600-146271400	Weak transcription	HSMMtube	muscle
39	chr6:146241800-146255000	Weak transcription	Brain Germinal Matrix	brain
40	chr6:146242200-146253000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:146243000-146252800	Weak transcription	HepG2	liver
42	chr6:146243000-146254600	Weak transcription	Brain Substantia Nigra	brain
43	chr6:146244000-146262000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:146244200-146270400	Weak transcription	Colonic Mucosa	Colon
45	chr6:146244400-146252600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:146244600-146262400	Weak transcription	Hela-S3	cervix
47	chr6:146245000-146251600	Weak transcription	Psoas Muscle	Psoas
48	chr6:146245000-146252800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:146245000-146253200	Weak transcription	NH-A	brain
50	chr6:146245200-146253400	Weak transcription	Brain Cingulate Gyrus	brain

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