Variant report

Variant	rs4896851
Chromosome Location	chr6:146278959-146278960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146276546..146279153-chr6:146279197..146280754,2	K562	blood:
2	chr6:146054743..146057884-chr6:146276241..146279001,3	K562	blood:

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs2247317	0.89[CEU][hapmap]
rs2247571	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253648	0.86[CEU][hapmap]
rs2254283	0.80[CEU][hapmap]
rs2265471	0.80[CEU][hapmap]
rs2265472	0.83[CEU][hapmap]
rs2265477	0.89[CEU][hapmap]
rs2777475	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2814864	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814880	0.84[CEU][hapmap]
rs3924502	0.80[CEU][hapmap]
rs4075694	0.80[CEU][hapmap]
rs4075695	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4075696	0.85[EUR][1000 genomes]
rs4243478	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs4280983	0.80[CEU][hapmap]
rs4316025	0.83[EUR][1000 genomes]
rs6570723	0.82[CEU][hapmap]
rs6570726	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6922507	0.80[CEU][hapmap]
rs6926076	0.84[CEU][hapmap]
rs6930181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7753092	0.83[CEU][hapmap]
rs7753696	0.80[CEU][hapmap]
rs854144	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373476	0.83[CEU][hapmap]
rs9386141	0.83[CEU][hapmap]
rs9403757	0.80[CEU][hapmap]
rs9497425	0.80[CEU][hapmap]
rs9497427	0.80[CEU][hapmap]
rs9497431	0.80[CEU][hapmap]
rs9791313	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
3	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:146232000-146282800	Weak transcription	NHLF	lung
5	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:146255800-146282000	Weak transcription	Right Ventricle	heart
7	chr6:146256600-146282000	Weak transcription	Lung	lung
8	chr6:146259600-146282000	Weak transcription	Esophagus	oesophagus
9	chr6:146259600-146283200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:146262200-146283400	Weak transcription	Fetal Stomach	stomach
11	chr6:146262400-146281400	Weak transcription	Thymus	Thymus
12	chr6:146264400-146282000	Weak transcription	Pancreas	Pancrea
13	chr6:146264800-146284600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:146267000-146281800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:146267000-146284200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:146267600-146282600	Weak transcription	Hela-S3	cervix
17	chr6:146268800-146284200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:146268800-146284600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:146269000-146282400	Weak transcription	Stomach Mucosa	stomach
20	chr6:146271000-146280600	Weak transcription	Psoas Muscle	Psoas
21	chr6:146271000-146281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:146271000-146284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:146271200-146281800	Weak transcription	Fetal Heart	heart
24	chr6:146271600-146280800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:146271600-146281600	Weak transcription	Brain Angular Gyrus	brain
26	chr6:146271600-146281800	Weak transcription	Fetal Brain Male	brain
27	chr6:146271600-146283400	Weak transcription	HMEC	breast
28	chr6:146271600-146283400	Weak transcription	HSMMtube	muscle
29	chr6:146271600-146283400	Weak transcription	NHDF-Ad	bronchial
30	chr6:146271600-146284200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:146271600-146284600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:146271800-146282200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:146271800-146283200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:146271800-146283200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:146271800-146283400	Weak transcription	NH-A	brain
36	chr6:146271800-146284200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:146272000-146282000	Weak transcription	Osteobl	bone
38	chr6:146272000-146283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:146272000-146284000	Weak transcription	A549	lung
40	chr6:146272200-146281200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:146272800-146281600	Weak transcription	HepG2	liver
42	chr6:146273000-146283200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:146273200-146281200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:146273200-146281400	Weak transcription	Gastric	stomach
45	chr6:146273200-146281400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:146273200-146281600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:146273200-146281800	Weak transcription	Aorta	Aorta
48	chr6:146273200-146282000	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:146273200-146282000	Weak transcription	Left Ventricle	heart
50	chr6:146273200-146283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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