Variant report

Variant	rs6930181
Chromosome Location	chr6:146180974-146180975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146169854..146171844-chr6:146179005..146181941,2	K562	blood:
2	chr6:146134564..146136850-chr6:146179157..146181695,2	K562	blood:

Variant related genes	Relation type
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10872580	0.82[CEU][hapmap]
rs12199362	0.82[CEU][hapmap]
rs1415746	0.82[CEU][hapmap]
rs1415747	0.82[CEU][hapmap]
rs1890171	0.85[CEU][hapmap]
rs2050027	0.82[CEU][hapmap]
rs2247317	0.85[CEU][hapmap]
rs2247571	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249386	0.82[CEU][hapmap]
rs2253648	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2265472	0.82[CEU][hapmap]
rs2265477	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs2328704	0.85[CEU][hapmap]
rs2777475	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2814864	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3811102	0.81[CEU][hapmap]
rs4075695	0.85[CEU][hapmap]
rs4243478	0.85[CEU][hapmap]
rs4896837	0.81[CEU][hapmap]
rs4896838	0.85[CEU][hapmap]
rs4896851	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570708	0.82[CEU][hapmap]
rs6570723	0.85[CEU][hapmap]
rs6570726	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6901888	0.82[CEU][hapmap]
rs6906258	0.82[CEU][hapmap]
rs6906402	0.82[CEU][hapmap]
rs6915718	0.82[CEU][hapmap]
rs6930154	0.81[CEU][hapmap]
rs697053	0.82[CEU][hapmap]
rs697054	0.82[CEU][hapmap]
rs697055	0.82[CEU][hapmap]
rs702304	0.82[CEU][hapmap]
rs702307	0.82[CEU][hapmap]
rs702313	0.82[EUR][1000 genomes]
rs702318	0.82[CEU][hapmap]
rs702324	0.82[CEU][hapmap]
rs7740785	0.88[EUR][1000 genomes]
rs7752286	0.82[CEU][hapmap]
rs7753770	0.85[CEU][hapmap]
rs854144	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9373473	0.81[EUR][1000 genomes]
rs9373475	0.82[CEU][hapmap]
rs9373476	0.85[CEU][hapmap]
rs9386133	0.82[CEU][hapmap]
rs9390343	0.84[CEU][hapmap]
rs9390344	0.88[CEU][hapmap]
rs9390356	0.82[CEU][hapmap]
rs9390358	0.82[CEU][hapmap]
rs9399568	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403742	0.85[CEU][hapmap]
rs9403750	0.82[CEU][hapmap]
rs9485024	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146172400-146181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:146172600-146181200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:146178200-146184200	Weak transcription	Primary B cells from cord blood	blood

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