Variant report

Variant	rs7740785
Chromosome Location	chr6:146171299-146171300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146169854..146171844-chr6:146179005..146181941,2	K562	blood:
2	chr6:146161591..146163305-chr6:146169579..146172257,2	MCF-7	breast:
3	chr6:146054622..146056898-chr6:146169724..146173183,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs1011596	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1011597	0.82[EUR][1000 genomes]
rs10214925	0.80[EUR][1000 genomes]
rs10223508	0.81[ASN][1000 genomes]
rs10447449	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055212	0.82[EUR][1000 genomes]
rs1062067	0.95[ASN][1000 genomes]
rs10872580	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155442	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1133832	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11760	0.91[ASN][1000 genomes]
rs11965018	0.84[ASN][1000 genomes]
rs12190966	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12199362	0.87[EUR][1000 genomes]
rs13214277	0.84[EUR][1000 genomes]
rs1337840	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13437042	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415746	0.86[EUR][1000 genomes]
rs1415747	0.86[EUR][1000 genomes]
rs1569540	0.84[ASN][1000 genomes]
rs1577916	0.83[EUR][1000 genomes]
rs1832362	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1883365	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1890171	0.85[EUR][1000 genomes]
rs1986729	0.87[EUR][1000 genomes]
rs2050027	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2064185	0.82[EUR][1000 genomes]
rs2092262	0.86[EUR][1000 genomes]
rs2142981	0.86[EUR][1000 genomes]
rs2142983	0.83[ASN][1000 genomes]
rs2243665	0.94[ASN][1000 genomes]
rs2246334	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2247206	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2247211	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2247317	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249147	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249386	0.90[EUR][1000 genomes]
rs2250387	0.95[ASN][1000 genomes]
rs2253194	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253307	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253648	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253654	0.84[EUR][1000 genomes]
rs2253764	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253768	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253880	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2253886	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253887	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254283	0.95[ASN][1000 genomes]
rs2254288	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2256998	0.95[ASN][1000 genomes]
rs2265467	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2265469	0.94[ASN][1000 genomes]
rs2265471	0.95[ASN][1000 genomes]
rs2265472	0.92[ASN][1000 genomes]
rs2265474	0.90[EUR][1000 genomes]
rs2265477	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265915	0.86[EUR][1000 genomes]
rs2265916	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265917	0.95[ASN][1000 genomes]
rs2265918	0.95[ASN][1000 genomes]
rs2265919	0.95[ASN][1000 genomes]
rs2328704	0.85[EUR][1000 genomes]
rs2328707	0.82[EUR][1000 genomes]
rs2328709	0.87[EUR][1000 genomes]
rs2485632	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814879	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2814880	0.95[ASN][1000 genomes]
rs3811102	0.87[EUR][1000 genomes]
rs4075695	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4075696	0.88[ASN][1000 genomes]
rs4243478	0.81[ASN][1000 genomes]
rs4314514	0.86[ASN][1000 genomes]
rs4316025	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4360151	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4391282	0.81[ASN][1000 genomes]
rs4435956	0.93[ASN][1000 genomes]
rs4566902	0.93[ASN][1000 genomes]
rs4895683	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895684	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4896841	0.82[EUR][1000 genomes]
rs4896842	0.82[EUR][1000 genomes]
rs4896843	0.82[EUR][1000 genomes]
rs4896844	0.86[EUR][1000 genomes]
rs62433835	0.86[EUR][1000 genomes]
rs62435810	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570713	0.86[EUR][1000 genomes]
rs6570717	0.84[EUR][1000 genomes]
rs6570719	0.82[EUR][1000 genomes]
rs6570723	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570724	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570726	0.84[EUR][1000 genomes]
rs6901888	0.80[EUR][1000 genomes]
rs6902913	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6906258	0.86[EUR][1000 genomes]
rs6906402	0.86[EUR][1000 genomes]
rs6910790	0.86[ASN][1000 genomes]
rs6915718	0.86[EUR][1000 genomes]
rs6917135	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917482	0.93[ASN][1000 genomes]
rs6921073	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6923678	0.82[EUR][1000 genomes]
rs6926076	0.93[ASN][1000 genomes]
rs6926657	0.89[ASN][1000 genomes]
rs6928007	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6930181	0.88[EUR][1000 genomes]
rs6931553	0.86[EUR][1000 genomes]
rs6933161	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6937661	0.86[EUR][1000 genomes]
rs7739735	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742333	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744014	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7745696	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747576	0.81[ASN][1000 genomes]
rs7752286	0.86[EUR][1000 genomes]
rs7753770	0.82[EUR][1000 genomes]
rs7753833	0.84[EUR][1000 genomes]
rs7762562	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373473	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373475	0.87[EUR][1000 genomes]
rs9373476	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376968	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376971	0.86[ASN][1000 genomes]
rs9386128	0.83[ASN][1000 genomes]
rs9386131	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386132	0.87[EUR][1000 genomes]
rs9386133	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386134	0.88[EUR][1000 genomes]
rs9386141	0.81[ASN][1000 genomes]
rs9390343	0.83[EUR][1000 genomes]
rs9390344	0.85[EUR][1000 genomes]
rs9390348	0.81[ASN][1000 genomes]
rs9390349	0.84[ASN][1000 genomes]
rs9390354	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390355	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9390356	0.87[EUR][1000 genomes]
rs9390357	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390358	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399564	0.82[EUR][1000 genomes]
rs9399565	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399567	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9399568	0.81[EUR][1000 genomes]
rs9399569	0.92[ASN][1000 genomes]
rs9399571	0.81[ASN][1000 genomes]
rs9403742	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403746	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403747	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403749	0.90[EUR][1000 genomes]
rs9403750	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403755	0.93[ASN][1000 genomes]
rs9403757	0.86[ASN][1000 genomes]
rs9485019	0.83[ASN][1000 genomes]
rs9485021	0.81[ASN][1000 genomes]
rs9485024	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497401	0.82[EUR][1000 genomes]
rs9497406	0.82[EUR][1000 genomes]
rs9497419	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497424	0.93[ASN][1000 genomes]
rs9497425	0.93[ASN][1000 genomes]
rs9497427	0.91[ASN][1000 genomes]
rs9497435	0.83[ASN][1000 genomes]
rs9791313	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146150600-146174000	Weak transcription	Right Ventricle	heart
2	chr6:146159600-146171400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:146160400-146171400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:146163800-146175000	Weak transcription	Left Ventricle	heart
5	chr6:146164600-146171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:146170400-146171400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:146170400-146172200	Enhancers	Adipose Nuclei	Adipose
8	chr6:146170600-146172600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:146170800-146171800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:146171200-146171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:146171200-146171600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:146171200-146171600	Enhancers	Aorta	Aorta
13	chr6:146171200-146171600	Enhancers	Psoas Muscle	Psoas
14	chr6:146171200-146171800	Enhancers	HUVEC	blood vessel
15	chr6:146171200-146172000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:146171200-146172000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:146171200-146172000	Enhancers	Osteobl	bone
18	chr6:146171200-146172400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links