Variant report

Variant	rs9390357
Chromosome Location	chr6:146129347-146129348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146129217..146132069-chr6:146270897..146273160,2	K562	blood:
2	chr6:146127456..146130857-chr6:146284369..146287201,3	K562	blood:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:146121190..146123447-chr6:146128257..146129853,2	MCF-7	breast:
5	chr6:146128343..146133564-chr6:146134211..146137578,9	MCF-7	breast:
6	chr6:146128264..146131082-chr6:146176752..146178262,2	K562	blood:
7	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
8	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146414	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 238 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs1004752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1011596	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1011597	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10214925	0.85[EUR][1000 genomes]
rs10223507	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs10447449	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1045820	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs1055212	0.87[EUR][1000 genomes]
rs1062067	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs1062068	0.89[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs10872579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10872580	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11155438	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs11155442	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1133832	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.81[ASN][1000 genomes]
rs11965018	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190966	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12199362	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1292333	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs1292334	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap]
rs1292335	0.82[CEU][hapmap]
rs1292336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1292337	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs1292339	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap]
rs13214277	0.88[EUR][1000 genomes]
rs1337839	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1337840	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337841	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13437042	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415744	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1415746	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs1415747	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs1569540	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1577916	0.88[EUR][1000 genomes]
rs1832362	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1883365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1890171	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs1986729	0.85[EUR][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs2072911	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2092262	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2092263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142981	0.90[EUR][1000 genomes]
rs2142983	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2243665	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs2246334	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2247206	0.81[ASN][1000 genomes]
rs2247211	0.81[ASN][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2247666	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2249147	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2249386	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2250387	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs2253194	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253307	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253648	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2253654	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2253764	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253768	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253880	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2253886	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2253887	0.80[ASN][1000 genomes]
rs2254283	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2254288	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.81[ASN][1000 genomes]
rs2256998	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs2265469	0.81[ASN][1000 genomes]
rs2265471	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2265472	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2265474	0.88[EUR][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs2265915	0.84[EUR][1000 genomes]
rs2265916	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265917	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs2265918	0.81[ASN][1000 genomes]
rs2265919	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs2328704	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2328707	0.87[EUR][1000 genomes]
rs2328709	0.91[EUR][1000 genomes]
rs2485632	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2748502	0.81[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs2777477	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs2814874	0.83[CEU][hapmap]
rs2814875	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs2814877	0.85[CEU][hapmap]
rs2814879	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2814880	0.87[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs3924499	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs3924502	0.89[CEU][hapmap]
rs4075694	0.89[CEU][hapmap]
rs4075695	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4243478	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4280983	0.89[CEU][hapmap]
rs4360151	0.88[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4455694	0.84[EUR][1000 genomes]
rs4895683	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4895684	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4896832	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs4896833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs4896837	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4896838	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896839	0.84[EUR][1000 genomes]
rs4896841	0.87[EUR][1000 genomes]
rs4896842	0.87[EUR][1000 genomes]
rs4896843	0.87[EUR][1000 genomes]
rs4896844	0.90[EUR][1000 genomes]
rs55810423	0.82[EUR][1000 genomes]
rs57700188	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62433835	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62435810	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6570701	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs6570703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs6570705	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs6570706	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6570708	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs6570713	0.90[EUR][1000 genomes]
rs6570715	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570716	0.82[EUR][1000 genomes]
rs6570717	0.88[EUR][1000 genomes]
rs6570719	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6570723	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570724	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570726	0.82[CEU][hapmap]
rs6570732	0.81[JPT][hapmap]
rs6901888	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs6902913	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6906258	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs6906402	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs6915718	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs6917135	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6921073	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922507	0.89[CEU][hapmap]
rs6923545	0.89[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap]
rs6923678	0.87[EUR][1000 genomes]
rs6926076	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6928007	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6930154	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6931553	0.90[EUR][1000 genomes]
rs6933161	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6937661	0.90[EUR][1000 genomes]
rs6941429	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs697053	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs697054	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs697055	0.96[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs697056	0.83[EUR][1000 genomes]
rs702304	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs702306	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs702307	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs702314	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702317	0.84[EUR][1000 genomes]
rs702318	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs702320	0.83[EUR][1000 genomes]
rs702321	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702323	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs702324	0.96[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs735535	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs735536	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7739735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740785	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7742333	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744014	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745696	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7752286	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7753092	0.88[CEU][hapmap]
rs7753696	0.89[CEU][hapmap]
rs7753770	0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs7753833	0.80[EUR][1000 genomes]
rs7762562	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs857875	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs857877	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap]
rs857879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857880	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs857881	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857882	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs857883	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9373471	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373473	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373475	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs9373476	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376955	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9376956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376961	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9376968	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376970	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs9376971	0.88[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9386128	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386131	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386132	0.91[EUR][1000 genomes]
rs9386133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386134	0.90[EUR][1000 genomes]
rs9386141	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9390343	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9390344	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9390348	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390349	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390354	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9390356	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs9390358	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390365	0.88[CEU][hapmap]
rs9399561	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs9399564	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9399565	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399567	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403737	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9403739	1.00[CEU][hapmap];0.83[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403741	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403742	0.93[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403746	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403747	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403749	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9403750	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403755	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs9403756	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs9403757	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs9485018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9485019	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485024	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497380	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap]
rs9497395	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9497396	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9497401	0.87[EUR][1000 genomes]
rs9497406	0.87[EUR][1000 genomes]
rs9497419	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497424	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap]
rs9497425	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9497427	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9497431	0.89[CEU][hapmap]
rs9497434	0.84[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap]
rs9791313	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs991507	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9390357	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs9390357	SHPRH	cis	cerebellum	SCAN
rs9390357	SHPRH	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
2	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
4	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:146117400-146130400	Strong transcription	HSMM	muscle
7	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
9	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
11	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:146121400-146135000	Weak transcription	Gastric	stomach
14	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:146125400-146134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:146125800-146133400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:146126200-146130800	Weak transcription	Psoas Muscle	Psoas
19	chr6:146126600-146133000	Weak transcription	Right Atrium	heart
20	chr6:146126600-146134400	Weak transcription	Right Ventricle	heart
21	chr6:146126800-146130600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:146127000-146133000	Weak transcription	Fetal Brain Male	brain
23	chr6:146127000-146133600	Weak transcription	Brain Germinal Matrix	brain
24	chr6:146127200-146134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:146127200-146134800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:146127400-146129600	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:146127400-146129800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:146127400-146129800	Weak transcription	Fetal Heart	heart
29	chr6:146127400-146130000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:146127400-146130400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:146127400-146130400	Weak transcription	Primary T cells from cord blood	blood
32	chr6:146127400-146130400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:146127400-146130400	Weak transcription	Fetal Lung	lung
34	chr6:146127400-146130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:146127400-146130400	Weak transcription	HMEC	breast
36	chr6:146127400-146130400	Weak transcription	HSMMtube	muscle
37	chr6:146127400-146130400	Weak transcription	NHLF	lung
38	chr6:146127400-146130600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:146127400-146130800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:146127400-146131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:146127400-146132000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:146127400-146132000	Weak transcription	Hela-S3	cervix
43	chr6:146127400-146132600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr6:146127400-146132600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:146127400-146132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:146127400-146133400	Weak transcription	Adipose Nuclei	Adipose
47	chr6:146127400-146133600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:146127400-146133600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:146127400-146133600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:146127400-146133600	Weak transcription	Aorta	Aorta

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