Variant report

Variant	rs9390343
Chromosome Location	chr6:146010527-146010528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs1004752	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1011596	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1011597	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1045820	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes]
rs1055212	0.82[EUR][1000 genomes]
rs1062067	0.86[JPT][hapmap]
rs1062068	0.81[CEU][hapmap]
rs10872579	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10872580	0.89[CEU][hapmap]
rs11155438	0.89[CEU][hapmap]
rs1133832	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs11965018	0.85[EUR][1000 genomes]
rs12199362	0.88[CEU][hapmap]
rs1292333	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs1292334	0.92[CEU][hapmap]
rs1292335	0.88[CEU][hapmap]
rs1292336	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1292337	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs1292339	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1337839	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1337840	0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1337841	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs13437042	0.82[EUR][1000 genomes]
rs1415744	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1415746	0.89[CEU][hapmap]
rs1415747	0.89[CEU][hapmap]
rs1569540	0.84[EUR][1000 genomes]
rs1577916	0.80[EUR][1000 genomes]
rs1832362	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs1883365	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1890171	0.89[CEU][hapmap]
rs1935616	0.81[AMR][1000 genomes]
rs2050027	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2064185	0.91[CEU][hapmap]
rs2072911	0.81[EUR][1000 genomes]
rs2092262	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2092263	0.93[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2142983	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2179323	0.80[AMR][1000 genomes]
rs2243665	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs2249386	0.88[CEU][hapmap]
rs2250387	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs2253307	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2253648	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs2253654	0.85[CEU][hapmap]
rs2253764	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2253768	0.86[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2254283	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs2254288	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs2328704	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2328707	0.82[EUR][1000 genomes]
rs2814880	0.83[CEU][hapmap];0.84[JPT][hapmap]
rs3811102	0.89[CEU][hapmap]
rs4455694	0.84[EUR][1000 genomes]
rs4895683	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4895684	0.81[EUR][1000 genomes]
rs4896829	0.86[EUR][1000 genomes]
rs4896831	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4896832	0.93[CEU][hapmap]
rs4896833	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs4896837	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896838	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896839	0.84[EUR][1000 genomes]
rs4896841	0.82[EUR][1000 genomes]
rs4896842	0.81[EUR][1000 genomes]
rs4896843	0.81[EUR][1000 genomes]
rs55810423	0.82[EUR][1000 genomes]
rs57700188	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62433835	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62438257	0.80[AMR][1000 genomes]
rs6570701	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs6570703	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs6570705	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs6570706	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs6570708	0.89[CEU][hapmap]
rs6570719	0.82[EUR][1000 genomes]
rs6570723	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs6570726	0.88[CEU][hapmap]
rs6901888	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6902913	0.81[EUR][1000 genomes]
rs6903252	0.84[EUR][1000 genomes]
rs6906258	0.89[CEU][hapmap]
rs6906402	0.89[CEU][hapmap]
rs6915718	0.89[CEU][hapmap]
rs6917135	0.86[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs6923678	0.82[EUR][1000 genomes]
rs6928007	0.82[EUR][1000 genomes]
rs6930154	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6930181	0.84[CEU][hapmap]
rs6932863	0.82[EUR][1000 genomes]
rs6933161	0.82[EUR][1000 genomes]
rs6941429	0.89[CEU][hapmap]
rs697053	0.89[CEU][hapmap]
rs697054	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs697055	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs697056	0.83[EUR][1000 genomes]
rs702304	0.89[CEU][hapmap]
rs702305	0.81[AMR][1000 genomes]
rs702306	0.84[CEU][hapmap]
rs702307	0.89[CEU][hapmap]
rs702313	0.83[EUR][1000 genomes]
rs702314	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702317	0.84[EUR][1000 genomes]
rs702318	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs702319	0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs702320	0.83[EUR][1000 genomes]
rs702321	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702322	0.81[JPT][hapmap]
rs702323	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702324	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs735535	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs735536	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7739735	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs7740785	0.83[EUR][1000 genomes]
rs7742333	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7744014	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs7745696	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7752286	0.89[CEU][hapmap]
rs7753770	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7762562	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7772286	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs857875	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs857877	0.92[CEU][hapmap]
rs857879	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes]
rs857880	0.93[CEU][hapmap]
rs857881	0.89[CEU][hapmap]
rs857882	0.93[CEU][hapmap]
rs857883	0.93[CEU][hapmap]
rs9373471	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9373473	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9373475	0.89[CEU][hapmap]
rs9373476	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9376954	0.81[AMR][1000 genomes]
rs9376955	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9376956	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes]
rs9376957	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9376961	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9386128	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386131	0.81[EUR][1000 genomes]
rs9386133	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9390344	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390348	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9390349	0.85[EUR][1000 genomes]
rs9390354	0.81[EUR][1000 genomes]
rs9390355	0.81[EUR][1000 genomes]
rs9390356	0.89[CEU][hapmap]
rs9390357	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9390358	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9399559	0.80[AMR][1000 genomes]
rs9399561	0.89[CEU][hapmap]
rs9399564	0.82[EUR][1000 genomes]
rs9399565	0.82[EUR][1000 genomes]
rs9403737	0.93[CEU][hapmap]
rs9403739	0.92[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403741	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403742	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403746	0.82[EUR][1000 genomes]
rs9403747	0.85[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs9403749	0.85[CEU][hapmap]
rs9403750	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9485017	0.81[JPT][hapmap]
rs9485018	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9485019	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9485021	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs9485024	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9497380	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs9497395	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497396	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497401	0.82[EUR][1000 genomes]
rs9497406	0.81[EUR][1000 genomes]
rs991507	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
2	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
3	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
4	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
5	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
6	chr6:146000600-146010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:146001800-146012200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:146003400-146010800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:146003400-146011600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:146003600-146010800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:146003600-146010800	Weak transcription	Aorta	Aorta
13	chr6:146003600-146020600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:146003800-146012200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:146003800-146012400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:146003800-146026600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:146003800-146029600	Weak transcription	Ovary	ovary
20	chr6:146006800-146014800	Weak transcription	Adipose Nuclei	Adipose
21	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:146007000-146022400	Weak transcription	Primary B cells from cord blood	blood
23	chr6:146007400-146043800	Weak transcription	Liver	Liver
24	chr6:146007600-146011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:146007800-146013600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:146008400-146011200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:146008600-146015600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:146009000-146010600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:146009200-146011000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:146009200-146011200	Enhancers	HUVEC	blood vessel
31	chr6:146009600-146010600	Weak transcription	NH-A	brain
32	chr6:146009600-146022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:146009800-146010800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:146010000-146010600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:146010000-146012200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:146010400-146010800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links