Variant report

Variant	rs7744014
Chromosome Location	chr6:146123818-146123819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146117599..146120240-chr6:146121870..146124861,2	MCF-7	breast:
2	chr6:146122818..146124634-chr6:146134997..146137828,2	MCF-7	breast:
3	chr6:146105593..146108141-chr6:146123626..146125725,2	K562	blood:
4	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 256 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:255)

rs_ID	r²[population]
rs1004752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011596	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1011597	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10214925	0.90[EUR][1000 genomes]
rs10223507	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs10447449	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1045820	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs1055212	0.92[EUR][1000 genomes]
rs1062067	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs1062068	0.89[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs1070517	0.81[EUR][1000 genomes]
rs1070519	0.80[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10872580	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11155438	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs11155442	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1133832	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs11760	0.81[ASN][1000 genomes]
rs11965018	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190966	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12199362	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs12211884	0.80[EUR][1000 genomes]
rs1292333	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1292334	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs1292335	0.82[CEU][hapmap]
rs1292336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1292337	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs1292338	0.80[EUR][1000 genomes]
rs1292339	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap]
rs13214277	0.92[EUR][1000 genomes]
rs1337839	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1337840	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1337841	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13437042	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415744	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1415746	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1415747	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1569540	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1577916	0.92[EUR][1000 genomes]
rs1832362	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1883365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890171	0.96[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1935616	0.82[EUR][1000 genomes]
rs1986729	0.89[EUR][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[EUR][1000 genomes]
rs2072911	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2092262	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2092263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2142981	0.94[EUR][1000 genomes]
rs2142983	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2179323	0.83[EUR][1000 genomes]
rs2243665	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs2246334	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2247206	0.84[ASN][1000 genomes]
rs2247211	0.84[ASN][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2247666	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2249147	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2249386	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2250387	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs2253194	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253307	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253648	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2253654	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2253764	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253768	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253880	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253886	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2253887	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2254283	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2254288	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs2256998	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs2265467	0.83[ASN][1000 genomes]
rs2265469	0.83[ASN][1000 genomes]
rs2265471	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2265472	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2265474	0.92[EUR][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs2265915	0.88[EUR][1000 genomes]
rs2265916	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2265917	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs2265918	0.84[ASN][1000 genomes]
rs2265919	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs2328704	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2328707	0.91[EUR][1000 genomes]
rs2328709	0.96[EUR][1000 genomes]
rs2485632	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2748502	0.81[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs2777477	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs2814874	0.83[CEU][hapmap]
rs2814875	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs2814877	0.85[CEU][hapmap]
rs2814879	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814880	0.87[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs3924499	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs3924502	0.89[CEU][hapmap]
rs4075694	0.89[CEU][hapmap]
rs4075695	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4243478	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4280983	0.89[CEU][hapmap]
rs4316025	0.82[ASN][1000 genomes]
rs4360151	0.88[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4435956	0.83[ASN][1000 genomes]
rs4455694	0.88[EUR][1000 genomes]
rs4566902	0.83[ASN][1000 genomes]
rs4634475	0.82[EUR][1000 genomes]
rs4895683	1.00[CEU][hapmap];0.81[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4895684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4896832	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs4896833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4896837	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896838	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4896839	0.88[EUR][1000 genomes]
rs4896841	0.92[EUR][1000 genomes]
rs4896842	0.91[EUR][1000 genomes]
rs4896843	0.91[EUR][1000 genomes]
rs4896844	0.95[EUR][1000 genomes]
rs55810423	0.86[EUR][1000 genomes]
rs57700188	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62433835	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62435810	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570701	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs6570703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6570705	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs6570706	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs6570708	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs6570713	0.95[EUR][1000 genomes]
rs6570715	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6570716	0.86[EUR][1000 genomes]
rs6570717	0.93[EUR][1000 genomes]
rs6570719	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6570723	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570724	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570726	0.82[CEU][hapmap]
rs6570732	0.81[JPT][hapmap]
rs6901888	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs6902913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906258	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs6906402	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs6915718	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs6917135	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917482	0.83[ASN][1000 genomes]
rs6921073	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6922507	0.89[CEU][hapmap]
rs6923545	0.89[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap]
rs6923678	0.92[EUR][1000 genomes]
rs6926076	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6928007	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930154	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6931553	0.94[EUR][1000 genomes]
rs6932863	0.81[EUR][1000 genomes]
rs6933161	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937661	0.95[EUR][1000 genomes]
rs6941429	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs697053	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs697054	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs697055	0.96[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs697056	0.87[EUR][1000 genomes]
rs702304	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs702305	0.83[EUR][1000 genomes]
rs702306	0.91[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs702307	0.96[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs702314	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702317	0.88[EUR][1000 genomes]
rs702318	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs702320	0.87[EUR][1000 genomes]
rs702321	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702323	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs702324	0.96[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs735535	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs735536	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7739735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740785	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742333	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7745696	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752286	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs7753092	0.88[CEU][hapmap]
rs7753696	0.89[CEU][hapmap]
rs7753770	0.96[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs7753833	0.84[EUR][1000 genomes]
rs7762562	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs857875	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs857877	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs857879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs857880	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs857881	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs857882	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs857883	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs9373471	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373473	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373475	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs9373476	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376954	0.82[EUR][1000 genomes]
rs9376955	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9376956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs9376957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376961	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376968	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376970	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs9376971	0.88[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9386128	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386132	0.95[EUR][1000 genomes]
rs9386133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386134	0.94[EUR][1000 genomes]
rs9386141	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9390343	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs9390344	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390348	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390349	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390354	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390355	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390356	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs9390357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390358	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390365	0.88[CEU][hapmap]
rs9399559	0.83[EUR][1000 genomes]
rs9399561	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs9399564	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9399565	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399567	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9399569	0.82[ASN][1000 genomes]
rs9403737	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs9403739	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9403741	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403742	0.93[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9403746	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403747	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403749	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9403750	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403755	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs9403756	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs9403757	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs9485018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485019	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9485021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485024	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497380	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs9497395	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9497396	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497398	0.82[EUR][1000 genomes]
rs9497401	0.92[EUR][1000 genomes]
rs9497406	0.91[EUR][1000 genomes]
rs9497419	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497424	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.83[ASN][1000 genomes]
rs9497425	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9497427	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9497431	0.89[CEU][hapmap]
rs9497434	0.84[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap]
rs9791313	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs991507	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7744014	SHPRH	cis	parietal	SCAN
rs7744014	SHPRH	cis	cerebellum	SCAN
rs7744014	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
3	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
5	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
8	chr6:146112400-146125400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:146112400-146125400	Weak transcription	Fetal Stomach	stomach
10	chr6:146112400-146125600	Weak transcription	Aorta	Aorta
11	chr6:146112400-146125600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:146112600-146124600	Weak transcription	Liver	Liver
14	chr6:146112600-146125800	Weak transcription	Fetal Brain Female	brain
15	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:146113800-146124000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:146113800-146126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:146114400-146125400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:146116400-146126600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:146116600-146124600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:146116800-146125400	Weak transcription	Esophagus	oesophagus
22	chr6:146116800-146126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:146117200-146126200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:146117400-146130400	Strong transcription	HSMM	muscle
26	chr6:146118000-146125600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:146118400-146126400	Weak transcription	Spleen	Spleen
28	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:146118800-146124800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:146118800-146125600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:146119000-146125600	Weak transcription	Brain Anterior Caudate	brain
32	chr6:146119000-146126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:146119200-146125600	Weak transcription	Ovary	ovary
34	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:146119400-146126400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:146119400-146127600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
38	chr6:146119600-146127400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:146119800-146125800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:146120000-146125800	Weak transcription	Right Ventricle	heart
41	chr6:146120200-146125400	Weak transcription	Lung	lung
42	chr6:146120200-146125600	Weak transcription	NHDF-Ad	bronchial
43	chr6:146120200-146127600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:146120200-146127600	Strong transcription	Dnd41	blood
45	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:146120800-146124400	Weak transcription	NH-A	brain
49	chr6:146120800-146125600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:146121200-146127600	Strong transcription	Osteobl	bone

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