Variant report

Variant	rs2265917
Chromosome Location	chr6:146212285-146212286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146204410..146206507-chr6:146211730..146213654,2	MCF-7	breast:
2	chr6:146133506..146135427-chr6:146211550..146213483,2	K562	blood:
3	chr6:146134558..146137380-chr6:146209564..146213180,4	MCF-7	breast:
4	chr6:146209846..146213898-chr6:146246538..146250051,3	K562	blood:
5	chr6:146208202..146210645-chr6:146210859..146213066,4	K562	blood:

Variant related genes	Relation type
ENSG00000118496	Chromatin interaction
ENSG00000146414	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 223 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs1004752	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1011596	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs1011597	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs10223507	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs10223508	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10447449	0.86[ASN][1000 genomes]
rs10457792	0.80[AMR][1000 genomes]
rs10457793	0.82[AMR][1000 genomes]
rs10457794	0.82[AMR][1000 genomes]
rs10457795	0.80[AMR][1000 genomes]
rs1062067	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062068	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10872580	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs11155442	0.86[ASN][1000 genomes]
rs11155452	0.80[AMR][1000 genomes]
rs1133832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755334	0.82[AMR][1000 genomes]
rs11760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190966	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12194437	0.82[AMR][1000 genomes]
rs12199362	0.85[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs13198450	0.80[EUR][1000 genomes]
rs1331634	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1331636	0.84[EUR][1000 genomes]
rs1331637	0.84[EUR][1000 genomes]
rs1337840	0.89[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap]
rs1337841	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs13437042	0.83[ASN][1000 genomes]
rs1412081	0.80[AMR][1000 genomes]
rs1415744	0.89[CEU][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap]
rs1415746	0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs1415747	0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs1832362	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1883365	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1890171	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs1986729	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2050027	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs2064185	0.91[CEU][hapmap]
rs2073287	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2092263	0.88[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2142983	0.85[CEU][hapmap]
rs2144477	0.80[AMR][1000 genomes]
rs2144478	0.80[ASN][1000 genomes]
rs2207785	0.84[EUR][1000 genomes]
rs2224120	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs2224121	0.84[EUR][1000 genomes]
rs2243665	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2246334	0.82[EUR][1000 genomes]
rs2247206	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247211	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247317	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2247666	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249147	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249386	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2250387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253194	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253307	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253648	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2253764	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253880	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253886	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253887	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254257	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2254283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256998	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265467	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265469	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265474	0.83[EUR][1000 genomes]
rs2265477	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265915	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2265916	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328704	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs2328712	0.84[EUR][1000 genomes]
rs2474356	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2485632	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492855	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2748482	0.84[EUR][1000 genomes]
rs2748483	0.84[EUR][1000 genomes]
rs2748484	0.84[EUR][1000 genomes]
rs2748485	0.83[EUR][1000 genomes]
rs2748499	0.85[EUR][1000 genomes]
rs2748500	0.81[ASN][1000 genomes]
rs2748502	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2777476	0.84[EUR][1000 genomes]
rs2777477	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2777484	0.84[EUR][1000 genomes]
rs2814863	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap]
rs2814866	0.84[EUR][1000 genomes]
rs2814867	0.83[EUR][1000 genomes]
rs2814869	0.85[EUR][1000 genomes]
rs2814874	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814875	0.85[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814876	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814877	0.96[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814879	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2814880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892453	0.80[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs3923579	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3924498	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3924499	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3924502	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4075694	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4075695	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4075696	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4243478	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4280983	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4314514	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4316025	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4360151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4391282	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4435956	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4566902	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895683	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs4895684	0.83[ASN][1000 genomes]
rs4896837	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs4896838	0.92[CEU][hapmap]
rs4896852	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56181683	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62435810	0.82[EUR][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570724	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570732	0.81[JPT][hapmap]
rs6570736	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6901888	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs6902913	0.84[ASN][1000 genomes]
rs6906258	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs6906402	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs6910790	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6914813	0.80[AMR][1000 genomes]
rs6915718	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs6917135	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917482	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6921073	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922507	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6923545	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924159	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6926076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926657	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928007	0.83[ASN][1000 genomes]
rs6930154	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs6933161	0.83[ASN][1000 genomes]
rs6938972	0.80[AMR][1000 genomes]
rs7739418	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7739735	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs7740785	0.95[ASN][1000 genomes]
rs7742333	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744014	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747576	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752286	0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs7753092	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7753696	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7753770	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs7755440	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs854145	0.81[EUR][1000 genomes]
rs863820	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap]
rs864390	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs866473	0.81[EUR][1000 genomes]
rs9322043	0.81[EUR][1000 genomes]
rs9322047	0.81[AMR][1000 genomes]
rs932522	0.80[EUR][1000 genomes]
rs9373473	0.83[ASN][1000 genomes]
rs9373475	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs9373476	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs9373485	0.81[AMR][1000 genomes]
rs9376961	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs9376968	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376970	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376975	0.81[EUR][1000 genomes]
rs9386131	0.84[ASN][1000 genomes]
rs9386132	0.80[EUR][1000 genomes]
rs9386133	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.86[ASN][1000 genomes]
rs9386134	0.81[EUR][1000 genomes]
rs9386141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390344	0.80[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs9390354	0.84[ASN][1000 genomes]
rs9390356	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs9390357	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs9390358	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390365	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390377	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9399565	0.83[ASN][1000 genomes]
rs9399567	0.83[EUR][1000 genomes]
rs9399569	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399571	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403739	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs9403741	0.89[CEU][hapmap]
rs9403742	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs9403747	0.81[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs9403749	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403755	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403756	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403764	0.80[EUR][1000 genomes]
rs9403765	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9485018	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs9485021	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9485024	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.86[ASN][1000 genomes]
rs9497395	0.89[CEU][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap]
rs9497419	0.86[ASN][1000 genomes]
rs9497424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497431	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9497434	0.85[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9497435	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2265917	SHPRH	cis	cerebellum	SCAN
rs2265917	SHPRH	cis	parietal	SCAN
rs2265917	ULBP3	trans	parietal	SCAN
rs2265917	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
2	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
3	chr6:146189400-146214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:146194800-146212400	Weak transcription	HUVEC	blood vessel
5	chr6:146196600-146219600	Weak transcription	HMEC	breast
6	chr6:146197800-146219600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:146198200-146212400	Weak transcription	Fetal Kidney	kidney
8	chr6:146198200-146218600	Weak transcription	Fetal Heart	heart
9	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
10	chr6:146199800-146214400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:146200000-146214200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
13	chr6:146200800-146213400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:146201200-146217400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:146201200-146230400	Weak transcription	NHEK	skin
17	chr6:146201800-146219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:146202800-146213800	Weak transcription	GM12878-XiMat	blood
19	chr6:146202800-146220000	Weak transcription	Thymus	Thymus
20	chr6:146203200-146219600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:146203400-146218600	Weak transcription	A549	lung
22	chr6:146204600-146214400	Weak transcription	Hela-S3	cervix
23	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:146205400-146214800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:146206600-146215400	Strong transcription	Adipose Nuclei	Adipose
26	chr6:146206800-146219600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:146207400-146217600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:146207800-146213600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:146208000-146219000	Weak transcription	Small Intestine	intestine
31	chr6:146208200-146213200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:146208200-146215400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:146208400-146215000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:146208400-146216800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:146208400-146218000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:146208400-146218800	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:146208800-146213200	Strong transcription	Fetal Lung	lung
38	chr6:146208800-146215400	Strong transcription	Fetal Thymus	thymus
39	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
40	chr6:146209000-146212800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr6:146209000-146214800	Strong transcription	K562	blood
42	chr6:146209000-146216800	Strong transcription	Dnd41	blood
43	chr6:146209200-146215200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:146209400-146215000	Strong transcription	Primary B cells from cord blood	blood
45	chr6:146209400-146215200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:146209600-146215000	Strong transcription	Left Ventricle	heart
47	chr6:146209600-146215000	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:146209800-146219000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:146210000-146212600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:146210200-146212400	Weak transcription	Primary T cells fromperipheralblood	blood

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