Variant report

Variant	rs2073287
Chromosome Location	chr6:146350264-146350265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:146350120-146350270	SK-N-SH_RA	brain:	n/a	n/a
2	REST	chr6:146348585-146350546	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
3	REST	chr6:146348713-146350338	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
4	REST	chr6:146348600-146350478	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
5	REST	chr6:146348456-146350610	HL-60	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:146350230-146350280	HCPEpiC	choroid plexus:	n/a
2	chr6:146350230-146350280	MCF-7	breast:	n/a
3	chr6:146350230-146350280	HEEpiC	esophagus:	n/a
4	chr6:146350230-146350280	GM06990	blood:	n/a
5	chr6:146350230-146350280	NHDF-neo	bronchial:	n/a
6	chr6:146350230-146350280	BJ	skin:	n/a
7	chr6:146350230-146350280	ECC-1	luminal epithelium:	n/a
8	chr6:146350230-146350280	NT2-D1	testis:	n/a
9	chr6:146350230-146350280	AG04450	lung:	fetal
10	chr6:146350230-146350280	IMR90	lung:	fetal
11	chr6:146350230-146350280	A549	lung:	n/a
12	chr6:146350230-146350280	PFSK-1	brain:	n/a
13	chr6:146350230-146350280	HRE	kidney:	n/a
14	chr6:146350230-146350280	MCF10A-Er-Src	breast:	n/a
15	chr6:146350230-146350280	HL-60	blood:	n/a
16	chr6:146350230-146350280	AG10803	skin:	n/a
17	chr6:146350230-146350280	SK-N-SH_RA	brain:	n/a
18	chr6:146350230-146350280	GM12878	blood:	n/a
19	chr6:146350230-146350280	AoSMC	blood vessel:	n/a
20	chr6:146350230-146350280	PrEC	prostate:	n/a
21	chr6:146350230-146350280	Jurkat	blood:	n/a
22	chr6:146350230-146350280	SK-N-MC	brain:	n/a
23	chr6:146350230-146350280	HMEC	breast:	n/a
24	chr6:146350230-146350280	H1-hESC	embryonic stem cell:	embryo
25	chr6:146350230-146350280	Hela-S3	cervix:	n/a
26	chr6:146350230-146350280	PANC-1	pancreas:	n/a
27	chr6:146350230-146350280	HAEpiC	amniotic membrane:	n/a
28	chr6:146350230-146350280	CMK	blood:	n/a
29	chr6:146350230-146350280	HCM	heart:	n/a
30	chr6:146350230-146350280	ovcar-3	ovarian:	n/a
31	chr6:146350230-146350280	GM12891	blood:	n/a
32	chr6:146350230-146350280	HIPEpiC	eye:	n/a
33	chr6:146350230-146350280	SAEC	small airway:	n/a
34	chr6:146350230-146350280	SKMC	muscle:	n/a
35	chr6:146350230-146350280	HNPCEpiC	eye:	n/a
36	chr6:146350230-146350280	BE2_C	brain:	n/a
37	chr6:146350230-146350280	AG09309	skin:	n/a
38	chr6:146350230-146350280	HRPEpiC	eye:	n/a
39	chr6:146350230-146350280	HPAEpiC	pulmonary alveolar:	n/a
40	chr6:146350230-146350280	RPTEC	kidney:	n/a
41	chr6:146350230-146350280	AG04449	skin:	fetal
42	chr6:146350230-146350280	HCT-116	colon:	n/a
43	chr6:146350230-146350280	HCF	heart:	n/a
44	chr6:146350230-146350280	K562	blood:	n/a
45	chr6:146350230-146350280	NHBE	bronchial:	n/a
46	chr6:146350230-146350280	GM19239	blood:	n/a
47	chr6:146350230-146350280	AG09319	gingival:	n/a
48	chr6:146350230-146350280	NH-A	brain:	n/a
49	chr6:146350230-146350280	GM12892	blood:	n/a
50	chr6:146350230-146350280	HepG2	liver:	n/a

Variant related genes	Relation type
GRM1	TF binding region
GRM1	CpG island

Extended variants
information (count: 161 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10223507	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs10223508	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10457792	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457793	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10457794	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10457795	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1062067	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1062068	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs10872582	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872583	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155452	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1133832	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs11755334	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760	0.80[EUR][1000 genomes]
rs12194437	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13198450	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13204280	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1331634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs1331636	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331637	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331639	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1331643	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1331645	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1412081	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474871	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1832362	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2144477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2144478	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207785	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2224120	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2224121	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2243665	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2247206	0.81[EUR][1000 genomes]
rs2247211	0.81[EUR][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2247429	0.80[EUR][1000 genomes]
rs2247666	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2249386	0.92[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs2250387	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs2253307	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2253648	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2253654	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs2253764	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2253768	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2254257	0.80[EUR][1000 genomes]
rs2254283	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2254288	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs2256998	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs2265468	0.81[EUR][1000 genomes]
rs2265469	0.81[EUR][1000 genomes]
rs2265471	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2265472	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2265917	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2265918	0.81[EUR][1000 genomes]
rs2265919	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2328712	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474356	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2492855	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2748482	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2748483	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748485	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2748486	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2748487	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2748499	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2748500	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2748502	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777474	0.84[ASN][1000 genomes]
rs2777476	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2777477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777484	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs2814866	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814867	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814869	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814874	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814875	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814876	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814877	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814880	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2892453	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923579	0.83[EUR][1000 genomes]
rs3924498	0.84[EUR][1000 genomes]
rs3924499	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs3924502	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4075694	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs4075695	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4075696	0.84[ASN][1000 genomes]
rs4243478	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4280983	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs4314514	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4360151	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4391282	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4435956	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4566902	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4896852	0.87[EUR][1000 genomes]
rs56181683	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570723	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6570736	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570738	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6908063	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910790	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6913797	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914813	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6917135	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6917482	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6922507	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs6923545	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs6924159	0.86[EUR][1000 genomes]
rs6926076	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6926657	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930975	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6934467	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6938972	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7739418	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7742333	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs7745696	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7747576	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753092	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7753696	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7755440	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7762562	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs854145	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863820	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs864390	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs866473	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9322043	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9322046	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322047	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322048	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932522	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9373485	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9376970	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs9376971	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376975	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386141	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390365	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9390377	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9399569	0.83[EUR][1000 genomes]
rs9399571	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399573	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403749	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs9403750	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9403755	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403756	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs9403757	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403764	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403765	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403767	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403768	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9497424	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs9497425	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9497427	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9497431	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs9497434	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs9497435	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs969694	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9791313	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2073287	ULBP3	cis	parietal	SCAN
rs2073287	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs2073287	SHPRH	cis	cerebellum	SCAN
rs2073287	SHPRH	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146348400-146351400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:146348600-146351200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr6:146348600-146351200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:146348600-146351400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:146348600-146351400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:146348600-146351600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:146348600-146351600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:146348800-146350400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:146348800-146350800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:146348800-146351200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
11	chr6:146348800-146351400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:146349000-146350400	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr6:146349000-146351800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
14	chr6:146349200-146350600	ZNF genes & repeats	Spleen	Spleen
15	chr6:146349400-146350600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:146349600-146350600	ZNF genes & repeats	Right Atrium	heart
17	chr6:146349600-146350800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:146349800-146350400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:146349800-146350600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:146349800-146350600	Bivalent Enhancer	Brain Substantia Nigra	brain
21	chr6:146349800-146350600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr6:146349800-146350600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr6:146349800-146350800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
24	chr6:146349800-146351400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr6:146349800-146351400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
26	chr6:146350000-146350400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:146350000-146350400	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
28	chr6:146350000-146350600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:146350000-146350600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:146350000-146351800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
33	chr6:146350200-146350400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:146350200-146350400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
35	chr6:146350200-146350600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:146350200-146350600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:146350200-146350600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
38	chr6:146350200-146350600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:146350200-146350600	Enhancers	Pancreas	Pancrea
40	chr6:146350200-146351200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
41	chr6:146350200-146351200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
42	chr6:146350200-146351400	Bivalent/Poised TSS	Fetal Brain Male	brain

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