Variant report
| Variant | rs2777474 |
|---|---|
| Chromosome Location | chr6:146304229-146304230 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:146284099..146286146-chr6:146302656..146306896,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146414 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10223508 | 0.91[ASN][1000 genomes] |
| rs10872582 | 0.82[ASN][1000 genomes] |
| rs2073287 | 0.84[ASN][1000 genomes] |
| rs2144478 | 0.82[ASN][1000 genomes] |
| rs2224121 | 0.82[ASN][1000 genomes] |
| rs2328712 | 0.84[ASN][1000 genomes] |
| rs2492855 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2748483 | 0.84[ASN][1000 genomes] |
| rs2748484 | 0.84[ASN][1000 genomes] |
| rs2748486 | 0.81[ASN][1000 genomes] |
| rs2748500 | 0.90[ASN][1000 genomes] |
| rs2748502 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2777477 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2777484 | 0.84[ASN][1000 genomes] |
| rs2814866 | 0.84[ASN][1000 genomes] |
| rs2892453 | 0.82[ASN][1000 genomes] |
| rs4075695 | 0.83[ASN][1000 genomes] |
| rs4075696 | 0.83[ASN][1000 genomes] |
| rs4243478 | 0.92[ASN][1000 genomes] |
| rs4314514 | 0.87[ASN][1000 genomes] |
| rs4360151 | 0.83[ASN][1000 genomes] |
| rs4391282 | 0.92[ASN][1000 genomes] |
| rs56181683 | 0.92[ASN][1000 genomes] |
| rs6910790 | 0.84[ASN][1000 genomes] |
| rs6926657 | 0.84[ASN][1000 genomes] |
| rs7739418 | 0.82[ASN][1000 genomes] |
| rs7747576 | 0.92[ASN][1000 genomes] |
| rs854145 | 0.84[ASN][1000 genomes] |
| rs864390 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9376971 | 0.87[ASN][1000 genomes] |
| rs9386141 | 0.91[ASN][1000 genomes] |
| rs9399571 | 0.92[ASN][1000 genomes] |
| rs9403757 | 0.87[ASN][1000 genomes] |
| rs9403765 | 0.82[ASN][1000 genomes] |
| rs9497435 | 0.88[ASN][1000 genomes] |
| rs9791313 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034226 | chr6:146071068-146306942 | Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
