Variant report

Variant	rs863820
Chromosome Location	chr6:146347402-146347403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 164 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs10223507	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs10223508	0.89[EUR][1000 genomes]
rs10457792	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10457793	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457794	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10457795	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062067	0.93[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1062068	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs10872582	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10872583	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11155452	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1133832	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs11755334	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11760	0.83[EUR][1000 genomes]
rs12194437	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13198450	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13204280	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1331634	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs1331636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331639	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1331643	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1331645	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1412081	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1474871	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1832362	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs1884364	0.92[AFR][1000 genomes]
rs2073287	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2144477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2144478	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2207785	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2224120	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224121	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2243665	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2247206	0.84[EUR][1000 genomes]
rs2247211	0.84[EUR][1000 genomes]
rs2247317	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2247429	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2247666	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2249386	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2250387	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2253307	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs2253648	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs2253654	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2253757	0.85[JPT][hapmap]
rs2253764	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs2253768	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs2254257	0.83[EUR][1000 genomes]
rs2254283	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2254288	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs2256998	0.92[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs2265468	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2265469	0.84[EUR][1000 genomes]
rs2265471	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs2265472	0.95[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2265477	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs2265917	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs2265918	0.84[EUR][1000 genomes]
rs2265919	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs2328712	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2474356	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2485631	0.85[JPT][hapmap]
rs2492855	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2748482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2748484	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2748485	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2748486	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2748487	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2748499	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2748500	0.89[EUR][1000 genomes]
rs2748502	0.96[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2777476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2777477	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2777484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2814863	0.81[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2814866	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2814867	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2814869	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814875	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814876	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814880	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2892453	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3923579	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3924498	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3924499	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3924502	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4075694	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4075695	0.85[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs4075696	0.80[EUR][1000 genomes]
rs4243478	0.85[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4280983	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4314514	0.90[EUR][1000 genomes]
rs4360151	0.96[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs4391282	0.89[EUR][1000 genomes]
rs4435956	0.87[EUR][1000 genomes]
rs4566902	0.88[EUR][1000 genomes]
rs4896852	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56181683	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6570723	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs6570732	0.81[JPT][hapmap]
rs6570736	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6570738	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6908063	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6910790	0.89[EUR][1000 genomes]
rs6913797	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6914813	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917135	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs6917482	0.88[EUR][1000 genomes]
rs6922507	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6923545	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6924159	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6926076	0.96[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs6926657	0.89[EUR][1000 genomes]
rs6930975	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6934467	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6938972	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739418	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7742333	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs7745696	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs7747576	0.90[EUR][1000 genomes]
rs7753092	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753696	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755440	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7762562	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs854145	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs864390	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs866473	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322043	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322046	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322047	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322048	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs932522	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373485	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376970	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376971	0.96[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs9376975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386136	0.85[JPT][hapmap]
rs9386141	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9390365	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390377	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399569	0.86[EUR][1000 genomes]
rs9399571	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9399573	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403749	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs9403750	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs9403755	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs9403756	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403757	0.96[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs9403764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403765	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403767	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497424	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs9497425	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs9497427	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs9497431	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497434	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497435	0.90[EUR][1000 genomes]
rs969694	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9791313	0.96[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs863820	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs863820	ULBP3	cis	parietal	SCAN
rs863820	SHPRH	cis	cerebellum	SCAN
rs863820	SHPRH	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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