Variant report

Variant	rs702313
Chromosome Location	chr6:146003401-146003402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs110289	0.81[EUR][1000 genomes]
rs1292335	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337840	0.83[EUR][1000 genomes]
rs1883407	0.82[EUR][1000 genomes]
rs1935617	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092262	0.85[EUR][1000 genomes]
rs2328704	0.86[EUR][1000 genomes]
rs365515	0.82[EUR][1000 genomes]
rs365658	0.80[EUR][1000 genomes]
rs366621	0.81[ASN][1000 genomes]
rs367612	0.85[EUR][1000 genomes]
rs373527	0.80[EUR][1000 genomes]
rs373704	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs373778	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs374464	0.86[EUR][1000 genomes]
rs376991	0.80[EUR][1000 genomes]
rs377130	0.80[EUR][1000 genomes]
rs377143	0.85[EUR][1000 genomes]
rs379164	0.80[EUR][1000 genomes]
rs382910	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs386678	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs387965	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs391820	0.82[EUR][1000 genomes]
rs392014	0.85[EUR][1000 genomes]
rs397418	0.80[EUR][1000 genomes]
rs400968	0.81[EUR][1000 genomes]
rs401888	0.80[EUR][1000 genomes]
rs404229	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs405622	0.88[EUR][1000 genomes]
rs406343	0.81[EUR][1000 genomes]
rs407721	0.81[EUR][1000 genomes]
rs408768	0.81[EUR][1000 genomes]
rs411641	0.80[EUR][1000 genomes]
rs413880	0.82[EUR][1000 genomes]
rs413916	0.80[EUR][1000 genomes]
rs414646	0.80[EUR][1000 genomes]
rs416243	0.81[EUR][1000 genomes]
rs418662	0.86[EUR][1000 genomes]
rs419854	0.80[EUR][1000 genomes]
rs419991	0.81[EUR][1000 genomes]
rs421032	0.85[EUR][1000 genomes]
rs421690	0.80[EUR][1000 genomes]
rs425731	0.80[EUR][1000 genomes]
rs430248	0.80[EUR][1000 genomes]
rs436066	0.86[EUR][1000 genomes]
rs439017	0.82[EUR][1000 genomes]
rs441364	0.86[EUR][1000 genomes]
rs441477	0.85[EUR][1000 genomes]
rs444564	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs446242	0.80[EUR][1000 genomes]
rs447818	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs450076	0.86[EUR][1000 genomes]
rs450973	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs454614	0.80[EUR][1000 genomes]
rs455109	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4895678	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs585292	0.80[EUR][1000 genomes]
rs62433835	0.85[EUR][1000 genomes]
rs636894	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570726	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6930181	0.82[EUR][1000 genomes]
rs7756778	0.83[EUR][1000 genomes]
rs9390329	0.85[EUR][1000 genomes]
rs9390343	0.83[EUR][1000 genomes]
rs9390344	0.86[EUR][1000 genomes]
rs9399549	0.82[EUR][1000 genomes]
rs9403706	0.82[EUR][1000 genomes]
rs9403707	0.82[EUR][1000 genomes]
rs9403742	0.82[EUR][1000 genomes]
rs9497316	0.81[EUR][1000 genomes]
rs951143	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323445	chr6:145999759-146003957	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
3	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:145990600-146004400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:145991200-146008800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:145991800-146009200	Weak transcription	NHDF-Ad	bronchial
7	chr6:145994600-146007000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:145994800-146008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
10	chr6:145995200-146004000	Weak transcription	Fetal Stomach	stomach
11	chr6:145995200-146006400	Weak transcription	Lung	lung
12	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
13	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
14	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
15	chr6:145999600-146008600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:146000600-146010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:146001600-146006400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:146001600-146008800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:146001800-146006400	Weak transcription	Fetal Lung	lung
20	chr6:146001800-146012200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:146002200-146007800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:146002400-146009400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:146002800-146003600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr6:146002800-146003600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr6:146002800-146003600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr6:146002800-146003600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:146002800-146003600	ZNF genes & repeats	Dnd41	blood
28	chr6:146002800-146003800	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr6:146002800-146003800	Strong transcription	Primary T cells from cord blood	blood
30	chr6:146002800-146003800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
31	chr6:146002800-146003800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:146002800-146003800	Strong transcription	Brain Anterior Caudate	brain
33	chr6:146002800-146003800	Strong transcription	Ovary	ovary
34	chr6:146002800-146003800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:146002800-146004000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:146002800-146005000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:146002800-146007400	Strong transcription	Liver	Liver
38	chr6:146003000-146003600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:146003000-146003600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr6:146003000-146003600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:146003000-146003600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr6:146003000-146003600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:146003000-146003600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr6:146003000-146003600	ZNF genes & repeats	Fetal Heart	heart
45	chr6:146003000-146003600	ZNF genes & repeats	Fetal Kidney	kidney
46	chr6:146003000-146003600	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr6:146003000-146003600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
48	chr6:146003000-146003800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:146003000-146003800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:146003000-146003800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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