Variant report

Variant	rs864148
Chromosome Location	chr6:145976675-145976676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 238 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:238)

rs_ID	r²[population]
rs1004752	0.84[EUR][1000 genomes]
rs10214925	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10447449	0.81[EUR][1000 genomes]
rs1045820	0.94[EUR][1000 genomes]
rs1055212	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1070516	0.86[EUR][1000 genomes]
rs1070517	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1070518	0.81[ASN][1000 genomes]
rs1070519	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1070520	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872577	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872579	0.94[EUR][1000 genomes]
rs10872580	0.81[EUR][1000 genomes]
rs11155433	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11155435	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155438	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155442	0.81[EUR][1000 genomes]
rs11965018	0.82[EUR][1000 genomes]
rs12199362	0.80[EUR][1000 genomes]
rs12205752	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208019	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208812	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211884	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280275	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280276	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292333	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292334	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292336	0.93[EUR][1000 genomes]
rs1292337	0.94[EUR][1000 genomes]
rs1292338	0.91[EUR][1000 genomes]
rs1292339	0.85[EUR][1000 genomes]
rs1337839	0.85[EUR][1000 genomes]
rs1337841	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1415744	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415746	0.82[EUR][1000 genomes]
rs1415747	0.82[EUR][1000 genomes]
rs1569540	0.80[EUR][1000 genomes]
rs1577916	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1890171	0.81[EUR][1000 genomes]
rs1912023	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935612	0.90[EUR][1000 genomes]
rs1935616	0.93[EUR][1000 genomes]
rs2064185	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2092263	0.84[EUR][1000 genomes]
rs2092295	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2092296	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092297	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2096201	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2103633	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142981	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2142983	0.80[EUR][1000 genomes]
rs2179323	0.94[EUR][1000 genomes]
rs2328707	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2328709	0.81[EUR][1000 genomes]
rs35970782	0.91[ASN][1000 genomes]
rs365747	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs365869	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367065	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs370112	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs370654	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs371186	0.88[EUR][1000 genomes]
rs372904	0.89[EUR][1000 genomes]
rs376257	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs378937	0.86[EUR][1000 genomes]
rs379040	0.89[EUR][1000 genomes]
rs3811102	0.80[EUR][1000 genomes]
rs383841	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385729	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs387376	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs392612	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs400329	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401331	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401561	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs405206	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs407887	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408443	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs409553	0.88[EUR][1000 genomes]
rs411785	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs412350	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs414297	0.89[EUR][1000 genomes]
rs414600	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418701	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs425999	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs426874	0.87[EUR][1000 genomes]
rs427128	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4332001	0.89[EUR][1000 genomes]
rs4335004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs434318	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs435671	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436156	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436498	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs437147	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs439035	0.88[EUR][1000 genomes]
rs440477	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs441290	0.88[EUR][1000 genomes]
rs443628	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4455694	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs446031	0.88[EUR][1000 genomes]
rs446362	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs448258	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs450921	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs451108	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs451699	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs453834	0.88[EUR][1000 genomes]
rs4634475	0.95[EUR][1000 genomes]
rs4896820	0.88[EUR][1000 genomes]
rs4896821	0.89[EUR][1000 genomes]
rs4896824	0.90[EUR][1000 genomes]
rs4896829	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896831	0.83[EUR][1000 genomes]
rs4896832	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896833	0.94[EUR][1000 genomes]
rs4896837	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896838	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4896839	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896841	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896842	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896843	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896844	0.82[EUR][1000 genomes]
rs621382	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62438257	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570692	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570700	0.90[EUR][1000 genomes]
rs6570701	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570703	0.94[EUR][1000 genomes]
rs6570705	0.94[EUR][1000 genomes]
rs6570706	0.94[EUR][1000 genomes]
rs6570708	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570713	0.82[EUR][1000 genomes]
rs6570717	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6899702	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6899900	0.88[EUR][1000 genomes]
rs6900040	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901888	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6902404	0.89[EUR][1000 genomes]
rs6902410	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6903252	0.81[EUR][1000 genomes]
rs6906258	0.82[EUR][1000 genomes]
rs6906402	0.82[EUR][1000 genomes]
rs6912079	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913727	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914203	0.90[EUR][1000 genomes]
rs6915094	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6915718	0.82[EUR][1000 genomes]
rs6919684	0.88[EUR][1000 genomes]
rs6923074	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923678	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6925594	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930154	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6932863	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941429	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697053	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697054	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697055	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697056	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702304	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702305	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702306	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702307	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702309	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702314	0.86[EUR][1000 genomes]
rs702317	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702318	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702319	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702320	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702321	0.85[EUR][1000 genomes]
rs702323	0.85[EUR][1000 genomes]
rs702324	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs735535	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs735536	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7746330	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752286	0.82[EUR][1000 genomes]
rs7753770	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755253	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755586	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755887	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7762536	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772286	0.82[EUR][1000 genomes]
rs7772717	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773939	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs857875	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857877	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857879	0.94[EUR][1000 genomes]
rs857880	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857881	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857882	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857883	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs870491	0.90[EUR][1000 genomes]
rs9322028	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322029	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373463	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373464	0.90[EUR][1000 genomes]
rs9373471	0.81[EUR][1000 genomes]
rs9373475	0.80[EUR][1000 genomes]
rs9373476	0.81[EUR][1000 genomes]
rs9376945	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376950	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376954	0.93[EUR][1000 genomes]
rs9376955	0.85[EUR][1000 genomes]
rs9376956	0.94[EUR][1000 genomes]
rs9376957	0.85[EUR][1000 genomes]
rs9376961	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9386128	0.82[EUR][1000 genomes]
rs9386132	0.80[EUR][1000 genomes]
rs9386133	0.81[EUR][1000 genomes]
rs9390336	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390338	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390349	0.82[EUR][1000 genomes]
rs9390356	0.80[EUR][1000 genomes]
rs9399553	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399555	0.88[EUR][1000 genomes]
rs9399559	0.94[EUR][1000 genomes]
rs9399561	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403726	0.90[EUR][1000 genomes]
rs9403729	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403730	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403731	0.90[EUR][1000 genomes]
rs9403734	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403735	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403737	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403739	0.85[EUR][1000 genomes]
rs9403741	0.84[EUR][1000 genomes]
rs9403742	0.82[ASN][1000 genomes]
rs9485018	0.83[EUR][1000 genomes]
rs9485019	0.81[EUR][1000 genomes]
rs9485021	0.80[EUR][1000 genomes]
rs9485024	0.81[EUR][1000 genomes]
rs9497357	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9497380	0.94[EUR][1000 genomes]
rs9497395	0.84[EUR][1000 genomes]
rs9497396	0.85[EUR][1000 genomes]
rs9497398	0.81[EUR][1000 genomes]
rs9497401	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497406	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497419	0.81[EUR][1000 genomes]
rs952405	0.90[EUR][1000 genomes]
rs952406	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs991507	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs864148	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
2	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
4	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:145955200-145976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:145955600-145977400	Weak transcription	Left Ventricle	heart
8	chr6:145960200-145978800	Weak transcription	Fetal Heart	heart
9	chr6:145973000-145977400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:145973400-145978800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:145973600-145990600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:145974200-146002800	Weak transcription	Liver	Liver
13	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:145976000-145984400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:145976600-145978600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:145976600-145984200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links