Variant report

Variant	rs867056
Chromosome Location	chr6:145784805-145784806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs367693	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs399502	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs403345	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs403956	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs426371	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4398765	0.88[EUR][1000 genomes]
rs441982	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs455001	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9373467	0.96[CEU][hapmap];0.88[YRI][hapmap];0.83[EUR][1000 genomes]
rs9376951	0.89[EUR][1000 genomes]
rs9403725	0.89[EUR][1000 genomes]
rs9497315	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs867056	EPM2A	cis	parietal	SCAN
rs867056	SHPRH	cis	cerebellum	SCAN
rs867056	SHPRH	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145768200-145803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links