Variant report

Variant	rs7746618
Chromosome Location	chr6:146281367-146281368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146280737..146283631-chr6:146283778..146285950,4	MCF-7	breast:
2	chr6:146280879..146282653-chr6:146284045..146286957,2	MCF-7	breast:
3	chr6:146244640..146248572-chr6:146280738..146282652,3	K562	blood:

Variant related genes	Relation type
ENSG00000146414	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1884364	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1970306	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2246132	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2253757	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2265475	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2485631	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2777485	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34541797	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62435775	0.82[AFR][1000 genomes]
rs6570732	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6912351	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9285508	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386136	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9390374	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497426	0.80[ASN][1000 genomes]
rs960385	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
3	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:146232000-146282800	Weak transcription	NHLF	lung
5	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:146255800-146282000	Weak transcription	Right Ventricle	heart
7	chr6:146256600-146282000	Weak transcription	Lung	lung
8	chr6:146259600-146282000	Weak transcription	Esophagus	oesophagus
9	chr6:146259600-146283200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:146262200-146283400	Weak transcription	Fetal Stomach	stomach
11	chr6:146262400-146281400	Weak transcription	Thymus	Thymus
12	chr6:146264400-146282000	Weak transcription	Pancreas	Pancrea
13	chr6:146264800-146284600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:146267000-146281800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:146267000-146284200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:146267600-146282600	Weak transcription	Hela-S3	cervix
17	chr6:146268800-146284200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:146268800-146284600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:146269000-146282400	Weak transcription	Stomach Mucosa	stomach
20	chr6:146271000-146284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:146271200-146281800	Weak transcription	Fetal Heart	heart
22	chr6:146271600-146281600	Weak transcription	Brain Angular Gyrus	brain
23	chr6:146271600-146281800	Weak transcription	Fetal Brain Male	brain
24	chr6:146271600-146283400	Weak transcription	HMEC	breast
25	chr6:146271600-146283400	Weak transcription	HSMMtube	muscle
26	chr6:146271600-146283400	Weak transcription	NHDF-Ad	bronchial
27	chr6:146271600-146284200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:146271600-146284600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:146271800-146282200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:146271800-146283200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:146271800-146283200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:146271800-146283400	Weak transcription	NH-A	brain
33	chr6:146271800-146284200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:146272000-146282000	Weak transcription	Osteobl	bone
35	chr6:146272000-146283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:146272000-146284000	Weak transcription	A549	lung
37	chr6:146272800-146281600	Weak transcription	HepG2	liver
38	chr6:146273000-146283200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:146273200-146281400	Weak transcription	Gastric	stomach
40	chr6:146273200-146281400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:146273200-146281600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:146273200-146281800	Weak transcription	Aorta	Aorta
43	chr6:146273200-146282000	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:146273200-146282000	Weak transcription	Left Ventricle	heart
45	chr6:146273200-146283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:146273200-146283600	Weak transcription	HUVEC	blood vessel
47	chr6:146273200-146284000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:146273200-146284200	Weak transcription	Colonic Mucosa	Colon
49	chr6:146273200-146284400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:146273400-146282000	Weak transcription	Brain Anterior Caudate	brain

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