Variant report

Variant	rs6918814
Chromosome Location	chr6:145906028-145906029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 258 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs1004752	0.89[CEU][hapmap]
rs1011596	0.88[CEU][hapmap]
rs1011597	0.88[CEU][hapmap]
rs1045820	0.88[CEU][hapmap]
rs10872577	0.87[EUR][1000 genomes]
rs10872579	0.92[CEU][hapmap]
rs110289	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155433	0.88[EUR][1000 genomes]
rs11155435	0.86[EUR][1000 genomes]
rs11155438	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs12205752	0.88[EUR][1000 genomes]
rs12208019	0.86[EUR][1000 genomes]
rs12208812	0.88[EUR][1000 genomes]
rs12663211	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1280275	0.87[EUR][1000 genomes]
rs1280276	0.87[EUR][1000 genomes]
rs1292333	0.89[CEU][hapmap]
rs1292334	0.88[CEU][hapmap]
rs1292335	0.89[CEU][hapmap]
rs1292336	0.89[CEU][hapmap]
rs1292337	0.88[CEU][hapmap]
rs1292339	0.81[CEU][hapmap]
rs1337839	0.89[CEU][hapmap]
rs1337841	0.89[CEU][hapmap]
rs1396648	0.85[CEU][hapmap]
rs1415744	0.88[CEU][hapmap]
rs1415746	0.92[CEU][hapmap]
rs1415747	0.92[CEU][hapmap]
rs1883365	0.89[CEU][hapmap]
rs1883406	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1890171	0.93[CEU][hapmap]
rs1935612	0.88[EUR][1000 genomes]
rs1935617	0.81[EUR][1000 genomes]
rs2064185	0.91[CEU][hapmap]
rs2092263	0.89[CEU][hapmap]
rs2092295	0.87[EUR][1000 genomes]
rs2092296	0.87[EUR][1000 genomes]
rs2092297	0.86[EUR][1000 genomes]
rs2096201	0.84[EUR][1000 genomes]
rs2103633	0.87[EUR][1000 genomes]
rs2328704	0.82[CEU][hapmap]
rs365658	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs365747	0.87[EUR][1000 genomes]
rs365869	0.87[EUR][1000 genomes]
rs366621	0.89[EUR][1000 genomes]
rs367065	0.87[EUR][1000 genomes]
rs367612	0.80[EUR][1000 genomes]
rs367643	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs368848	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs369214	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs370112	0.86[EUR][1000 genomes]
rs370654	0.87[EUR][1000 genomes]
rs372378	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs372904	0.87[EUR][1000 genomes]
rs373313	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs373321	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs373704	0.82[EUR][1000 genomes]
rs373778	0.83[EUR][1000 genomes]
rs374000	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs374464	0.81[EUR][1000 genomes]
rs374728	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs375873	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs376257	0.85[EUR][1000 genomes]
rs376991	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs377130	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377143	0.80[EUR][1000 genomes]
rs379040	0.87[EUR][1000 genomes]
rs379164	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs380883	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs382910	0.90[EUR][1000 genomes]
rs383841	0.86[EUR][1000 genomes]
rs384453	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs384519	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs385134	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs385729	0.86[EUR][1000 genomes]
rs386344	0.89[EUR][1000 genomes]
rs386678	0.83[EUR][1000 genomes]
rs387965	0.90[EUR][1000 genomes]
rs388394	0.89[EUR][1000 genomes]
rs388728	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs390252	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs391524	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs392014	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs392612	0.87[EUR][1000 genomes]
rs395948	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs396492	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs396681	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs397311	0.82[EUR][1000 genomes]
rs397418	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs399089	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs399516	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs400329	0.85[EUR][1000 genomes]
rs401331	0.82[EUR][1000 genomes]
rs401561	0.81[EUR][1000 genomes]
rs401888	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs404229	0.83[EUR][1000 genomes]
rs405206	0.82[EUR][1000 genomes]
rs405622	0.81[EUR][1000 genomes]
rs406343	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406799	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs407721	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407887	0.82[EUR][1000 genomes]
rs408443	0.87[EUR][1000 genomes]
rs408768	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs411468	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs411641	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs411785	0.87[EUR][1000 genomes]
rs413916	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs414222	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs414297	0.87[EUR][1000 genomes]
rs414600	0.87[EUR][1000 genomes]
rs414646	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs415590	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs416243	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs416987	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs418662	0.81[EUR][1000 genomes]
rs418701	0.87[EUR][1000 genomes]
rs419847	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs419850	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs419854	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs419991	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs421032	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs421268	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs421690	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs425731	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs427128	0.87[EUR][1000 genomes]
rs428659	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs429306	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs430003	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs430248	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs430561	0.88[ASN][1000 genomes]
rs4335004	0.87[EUR][1000 genomes]
rs434298	0.88[EUR][1000 genomes]
rs434318	0.85[EUR][1000 genomes]
rs435671	0.87[EUR][1000 genomes]
rs436066	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs436156	0.87[EUR][1000 genomes]
rs436212	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs436498	0.87[EUR][1000 genomes]
rs437147	0.86[EUR][1000 genomes]
rs4383831	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs440477	0.86[EUR][1000 genomes]
rs441364	0.81[EUR][1000 genomes]
rs441477	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs441575	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs442254	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs442435	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs443628	0.85[EUR][1000 genomes]
rs444564	0.82[EUR][1000 genomes]
rs446242	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs446362	0.87[EUR][1000 genomes]
rs447818	0.90[EUR][1000 genomes]
rs448258	0.87[EUR][1000 genomes]
rs449377	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs450076	0.81[EUR][1000 genomes]
rs450921	0.87[EUR][1000 genomes]
rs450973	0.82[EUR][1000 genomes]
rs451108	0.81[EUR][1000 genomes]
rs451349	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs451699	0.82[EUR][1000 genomes]
rs452552	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs452770	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs453609	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs454370	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs454614	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs455109	0.83[EUR][1000 genomes]
rs4895678	0.81[EUR][1000 genomes]
rs4896821	0.80[EUR][1000 genomes]
rs4896831	0.82[CEU][hapmap]
rs4896832	0.89[CEU][hapmap]
rs4896833	0.85[CEU][hapmap]
rs4896837	0.92[CEU][hapmap]
rs4896838	0.93[CEU][hapmap]
rs585292	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs636894	0.89[EUR][1000 genomes]
rs640544	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570692	0.88[EUR][1000 genomes]
rs6570701	0.89[CEU][hapmap]
rs6570703	0.90[CEU][hapmap]
rs6570705	0.88[CEU][hapmap]
rs6570708	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6899702	0.86[EUR][1000 genomes]
rs6900040	0.87[EUR][1000 genomes]
rs6901888	0.93[CEU][hapmap]
rs6902404	0.80[EUR][1000 genomes]
rs6902410	0.88[EUR][1000 genomes]
rs6906258	0.93[CEU][hapmap]
rs6906402	0.93[CEU][hapmap]
rs6912079	0.87[EUR][1000 genomes]
rs6913727	0.88[EUR][1000 genomes]
rs6914203	0.88[EUR][1000 genomes]
rs6915094	0.87[EUR][1000 genomes]
rs6915718	0.92[CEU][hapmap]
rs6923074	0.87[EUR][1000 genomes]
rs6925594	0.88[EUR][1000 genomes]
rs6930154	0.89[CEU][hapmap]
rs6941429	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs697053	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs697054	0.92[CEU][hapmap]
rs697055	0.92[CEU][hapmap]
rs702304	0.92[CEU][hapmap]
rs702306	0.88[CEU][hapmap]
rs702307	0.93[CEU][hapmap]
rs702318	0.92[CEU][hapmap]
rs702324	0.92[CEU][hapmap]
rs7746330	0.88[EUR][1000 genomes]
rs7752286	0.92[CEU][hapmap]
rs7753770	0.93[CEU][hapmap]
rs7755253	0.86[EUR][1000 genomes]
rs7755586	0.83[EUR][1000 genomes]
rs7755887	0.85[EUR][1000 genomes]
rs7756778	0.83[EUR][1000 genomes]
rs7772717	0.81[EUR][1000 genomes]
rs857875	0.88[CEU][hapmap]
rs857877	0.88[CEU][hapmap]
rs857879	0.89[CEU][hapmap]
rs857880	0.89[CEU][hapmap]
rs857881	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs857882	0.89[CEU][hapmap]
rs857883	0.89[CEU][hapmap]
rs9322028	0.88[EUR][1000 genomes]
rs9322029	0.88[EUR][1000 genomes]
rs9373463	0.87[EUR][1000 genomes]
rs9373464	0.88[EUR][1000 genomes]
rs9376945	0.82[EUR][1000 genomes]
rs9376950	0.88[EUR][1000 genomes]
rs9376955	0.82[CEU][hapmap]
rs9376956	0.89[CEU][hapmap]
rs9376957	0.89[CEU][hapmap]
rs9376961	0.88[CEU][hapmap]
rs9390329	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390336	0.88[EUR][1000 genomes]
rs9390338	0.88[EUR][1000 genomes]
rs9390343	0.81[CEU][hapmap]
rs9390344	0.81[CEU][hapmap]
rs9399553	0.87[EUR][1000 genomes]
rs9399561	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9403726	0.88[EUR][1000 genomes]
rs9403729	0.88[EUR][1000 genomes]
rs9403730	0.88[EUR][1000 genomes]
rs9403731	0.88[EUR][1000 genomes]
rs9403734	0.85[EUR][1000 genomes]
rs9403735	0.87[EUR][1000 genomes]
rs9403737	0.89[CEU][hapmap]
rs9403739	0.88[CEU][hapmap]
rs9403741	0.89[CEU][hapmap]
rs9403742	0.81[CEU][hapmap]
rs9485018	0.89[CEU][hapmap]
rs9497357	0.88[EUR][1000 genomes]
rs9497380	0.88[CEU][hapmap]
rs9497395	0.88[CEU][hapmap]
rs951143	0.81[EUR][1000 genomes]
rs973856	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3397700	chr6:145903709-145906207	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145905200-145910200	Weak transcription	Esophagus	oesophagus

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