Variant report

Variant	rs1416287
Chromosome Location	chr6:140366678-140366679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1390499	0.84[EUR][1000 genomes]
rs1572671	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs188002	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201281	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs505897	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921044	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321762	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3395457	chr6:140364559-140368757	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140361200-140366800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:140361200-140366800	Enhancers	HMEC	breast
3	chr6:140361200-140367000	Enhancers	NHEK	skin
4	chr6:140363200-140366800	Enhancers	Hela-S3	cervix
5	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:140364000-140367200	Enhancers	NHDF-Ad	bronchial
8	chr6:140364400-140366800	Enhancers	Fetal Heart	heart
9	chr6:140364400-140367000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:140364400-140367600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:140365000-140366800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:140365600-140366800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140365600-140373000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:140365600-140374200	Weak transcription	A549	lung
15	chr6:140365800-140371200	Weak transcription	Osteobl	bone
16	chr6:140366200-140366800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:140366200-140366800	Enhancers	Left Ventricle	heart
18	chr6:140366200-140366800	Enhancers	Right Atrium	heart
19	chr6:140366200-140368200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:140366400-140366800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:140366400-140366800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:140366400-140366800	Enhancers	Esophagus	oesophagus
23	chr6:140366400-140366800	ZNF genes & repeats	NH-A	brain
24	chr6:140366400-140366800	Enhancers	NHLF	lung
25	chr6:140366400-140368000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:140366400-140370600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:140366600-140366800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:140366600-140366800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr6:140366600-140366800	Enhancers	Aorta	Aorta
30	chr6:140366600-140366800	Enhancers	Pancreas	Pancrea
31	chr6:140366600-140366800	Enhancers	Small Intestine	intestine
32	chr6:140366600-140367000	Genic enhancers	HSMM	muscle
33	chr6:140366600-140367400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr6:140366600-140371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:140366600-140371200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:140366600-140372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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