Variant report

Variant	rs9321762
Chromosome Location	chr6:140393438-140393439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140259101..140260613-chr6:140392985..140394569,2	K562	blood:
2	chr6:140388648..140390950-chr6:140391151..140393468,2	MCF-7	breast:
3	chr6:140392899..140394946-chr6:140602471..140604861,2	MCF-7	breast:
4	chr6:139695731..139697417-chr6:140391415..140394003,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1390499	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1416287	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1416288	0.92[YRI][hapmap]
rs1572671	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs188002	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs505897	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs632430	0.81[CEU][hapmap]
rs644333	0.81[ASN][1000 genomes]
rs675432	0.81[ASN][1000 genomes]
rs6921044	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6933684	0.83[YRI][hapmap]
rs9376510	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs982369	0.84[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140384600-140394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:140390000-140395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:140390000-140395400	Enhancers	NHDF-Ad	bronchial
4	chr6:140390200-140395400	Enhancers	NHLF	lung
5	chr6:140390400-140395000	Enhancers	Osteobl	bone
6	chr6:140390800-140394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:140391200-140395000	Enhancers	Fetal Lung	lung
8	chr6:140391400-140393600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:140391400-140395000	Enhancers	Hela-S3	cervix
10	chr6:140391600-140393600	Enhancers	Fetal Heart	heart
11	chr6:140391600-140394000	Enhancers	HUVEC	blood vessel
12	chr6:140391600-140395200	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:140391800-140393800	Enhancers	Fetal Kidney	kidney
14	chr6:140391800-140393800	Enhancers	NH-A	brain
15	chr6:140391800-140394000	Enhancers	HSMM	muscle
16	chr6:140391800-140394400	Enhancers	Adipose Nuclei	Adipose
17	chr6:140391800-140395000	Enhancers	Fetal Brain Male	brain
18	chr6:140392200-140393600	Enhancers	Liver	Liver
19	chr6:140393000-140393600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:140393000-140393800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:140393000-140394000	Weak transcription	Fetal Brain Female	brain
22	chr6:140393000-140394600	Weak transcription	Aorta	Aorta
23	chr6:140393000-140394800	Weak transcription	Fetal Stomach	stomach
24	chr6:140393000-140395000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:140393000-140399200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:140393000-140399200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:140393000-140399200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:140393000-140399400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:140393000-140400000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:140393000-140400400	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:140393000-140400600	Weak transcription	Ovary	ovary
32	chr6:140393200-140393600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:140393200-140393600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:140393200-140394200	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:140393400-140393600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:140393400-140394200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:140393400-140395200	Enhancers	Muscle Satellite Cultured Cells	--

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