Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12523815	0.94[EUR][1000 genomes]
rs1390498	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1390499	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1416288	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs188002	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs201281	0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[YRI][hapmap]
rs2050717	0.92[EUR][1000 genomes]
rs4243464	0.87[EUR][1000 genomes]
rs4895579	0.83[YRI][hapmap]
rs494794	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs532938	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs538875	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs603321	0.83[YRI][hapmap]
rs623331	0.83[YRI][hapmap]
rs6570390	0.87[EUR][1000 genomes]
rs675432	0.90[CHB][hapmap]
rs6933684	0.83[YRI][hapmap]
rs702284	0.87[EUR][1000 genomes]
rs9321762	0.84[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9376507	0.85[EUR][1000 genomes]
rs982369	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs644333	IL22RA2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140415600-140418400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:140415600-140418600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:140415800-140417800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:140415800-140417800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:140415800-140418000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:140415800-140418600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:140415800-140419000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:140416200-140418200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:140416200-140419800	Weak transcription	Aorta	Aorta
10	chr6:140417000-140417800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:140417200-140417800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:140417400-140417800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:140417400-140418000	Enhancers	HUVEC	blood vessel
14	chr6:140417400-140427000	Weak transcription	Gastric	stomach

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