Variant report

Variant	rs6570390
Chromosome Location	chr6:140565473-140565474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12523815	0.82[EUR][1000 genomes]
rs1390498	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1390499	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs188002	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs201281	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs34380839	0.84[ASN][1000 genomes]
rs35927834	0.85[ASN][1000 genomes]
rs494794	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs532938	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs538875	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs644333	0.87[EUR][1000 genomes]
rs675432	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs67762923	0.85[ASN][1000 genomes]
rs702284	0.89[EUR][1000 genomes]
rs8180615	0.90[ASN][1000 genomes]
rs9321762	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs9373275	0.90[ASN][1000 genomes]
rs9376507	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9376510	0.86[ASN][1000 genomes]
rs9376516	0.90[ASN][1000 genomes]
rs9376517	0.83[ASN][1000 genomes]
rs9389786	0.87[ASN][1000 genomes]
rs9389787	0.86[ASN][1000 genomes]
rs9389788	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9399314	0.84[ASN][1000 genomes]
rs982369	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140563600-140569600	Weak transcription	Placenta	Placenta
2	chr6:140565000-140573200	Weak transcription	K562	blood

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