Variant report
| Variant | rs9389788 |
|---|---|
| Chromosome Location | chr6:140623538-140623539 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:140617127..140621095-chr6:140621488..140626438,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12530095 | 0.80[ASN][1000 genomes] |
| rs13216392 | 0.81[ASN][1000 genomes] |
| rs1390498 | 0.85[ASN][1000 genomes] |
| rs1390499 | 0.86[ASN][1000 genomes] |
| rs1856756 | 0.81[ASN][1000 genomes] |
| rs188002 | 0.80[ASN][1000 genomes] |
| rs201281 | 0.80[ASN][1000 genomes] |
| rs34380839 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35442760 | 0.82[ASN][1000 genomes] |
| rs35927834 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs494794 | 0.87[ASN][1000 genomes] |
| rs6570390 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6570396 | 0.81[ASN][1000 genomes] |
| rs669704 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs675432 | 0.89[ASN][1000 genomes] |
| rs67762923 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8180615 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9373275 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9376510 | 0.86[ASN][1000 genomes] |
| rs9376516 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9376517 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9385911 | 0.81[ASN][1000 genomes] |
| rs9389786 | 0.90[ASN][1000 genomes] |
| rs9389787 | 0.89[ASN][1000 genomes] |
| rs9399314 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs982369 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1015293 | chr6:140544956-140798437 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv817390 | chr6:140558103-141166039 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140610800-140624600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
