Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12526285	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530095	0.91[ASN][1000 genomes]
rs13197876	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13216392	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1832676	0.83[ASN][1000 genomes]
rs1856754	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1856756	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1856757	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34380839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35442760	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570390	0.85[ASN][1000 genomes]
rs6570396	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67762923	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8180615	0.81[ASN][1000 genomes]
rs9373275	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376516	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376517	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385911	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9389788	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399314	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140692000-140693600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:140692200-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:140692200-140693600	Enhancers	NHDF-Ad	bronchial
4	chr6:140692200-140693800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:140692400-140693600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:140692400-140693800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:140692600-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:140692600-140693600	Enhancers	Fetal Heart	heart
9	chr6:140692800-140693600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:140693000-140693600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:140693000-140696200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:140693200-140693800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:140693400-140693600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:140693400-140700200	Weak transcription	NHLF	lung

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