Variant report

Variant	rs12526285
Chromosome Location	chr6:140695031-140695032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12530095	0.85[ASN][1000 genomes]
rs13216392	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1856754	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1856756	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1856757	0.84[ASN][1000 genomes]
rs34380839	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35442760	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35927834	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570396	0.85[ASN][1000 genomes]
rs67762923	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9373275	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376516	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376517	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385911	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399314	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140693000-140696200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:140693400-140700200	Weak transcription	NHLF	lung
3	chr6:140693600-140697000	Weak transcription	Fetal Heart	heart
4	chr6:140693600-140701200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links