Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140676306..140678846-chr6:140681431..140683957,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12526285	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12530095	0.92[ASN][1000 genomes]
rs13197876	0.83[EUR][1000 genomes]
rs13216392	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1832676	0.84[ASN][1000 genomes]
rs1856754	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1856756	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1856757	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34380839	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35442760	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35927834	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570390	0.85[ASN][1000 genomes]
rs6570396	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs669704	0.82[EUR][1000 genomes]
rs8180615	0.82[ASN][1000 genomes]
rs9373275	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376516	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376517	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385911	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9389788	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399314	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140679000-140683400	Weak transcription	Placenta	Placenta
2	chr6:140681400-140685000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140682000-140685000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:140682200-140683400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:140683000-140683400	Enhancers	Pancreatic Islets	Pancreatic Islet

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