Variant report

Variant	rs9376516
Chromosome Location	chr6:140668832-140668833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12526285	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12530095	0.87[ASN][1000 genomes]
rs13216392	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1390499	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs1856754	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1856756	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1856757	0.87[ASN][1000 genomes]
rs188002	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs201281	0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[YRI][hapmap]
rs34380839	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35442760	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35927834	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570390	0.90[ASN][1000 genomes]
rs6570396	0.88[ASN][1000 genomes]
rs669704	0.88[EUR][1000 genomes]
rs675432	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs67762923	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8180615	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376517	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9385911	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9389786	0.83[ASN][1000 genomes]
rs9389787	0.82[ASN][1000 genomes]
rs9389788	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399314	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs982369	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140660000-140670400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:140664400-140669400	Enhancers	HUVEC	blood vessel
3	chr6:140665200-140669000	Enhancers	NHLF	lung
4	chr6:140667400-140669000	Enhancers	Hela-S3	cervix
5	chr6:140667600-140669000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:140668000-140669000	Enhancers	Ovary	ovary
7	chr6:140668000-140671600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:140668200-140669000	Enhancers	Fetal Heart	heart
9	chr6:140668200-140670600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:140668400-140674400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:140668600-140669000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:140668800-140669000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140668800-140671800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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