Variant report

Variant	rs532938
Chromosome Location	chr6:140470838-140470839
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140467252..140471466-chr6:140472412..140477060,5	K562	blood:
2	chr6:139694898..139697270-chr6:140470388..140472707,3	K562	blood:
3	chr6:140469107..140471606-chr6:140489334..140493465,3	K562	blood:
4	chr6:140469028..140473078-chr6:140508512..140512504,3	K562	blood:
5	chr6:140468617..140471093-chr6:140487211..140489040,2	K562	blood:
6	chr6:140468598..140473264-chr6:140478819..140483258,6	K562	blood:
7	chr6:139694328..139697270-chr6:140468541..140471888,4	K562	blood:
8	chr6:140470460..140473376-chr6:140484391..140487088,2	K562	blood:
9	chr6:140469961..140471694-chr6:140504902..140507388,2	K562	blood:
10	chr6:140468329..140473264-chr6:140478010..140482818,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12523815	0.82[EUR][1000 genomes]
rs1390498	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2050717	0.80[EUR][1000 genomes]
rs494794	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538875	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs644333	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6570390	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs702284	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9376507	0.85[EUR][1000 genomes]
rs982369	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140468000-140472200	Active TSS	K562	blood
2	chr6:140468800-140471400	Active TSS	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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