Variant report

Variant	rs1416557
Chromosome Location	chr20:15957267-15957268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1339255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814418	1.00[EUR][1000 genomes]
rs4814421	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034337	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034338	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043627	1.00[EUR][1000 genomes]
rs6043632	1.00[EUR][1000 genomes]
rs6043638	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6080022	1.00[EUR][1000 genomes]
rs6131746	0.86[AMR][1000 genomes]
rs7352227	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15953000-15959800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15953400-15957400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15954600-15959200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr20:15954800-15958800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:15955000-15957800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:15955600-15957600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:15955800-15957400	Weak transcription	Primary B cells from cord blood	blood
8	chr20:15956000-15957800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15956400-15957800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr20:15956600-15957400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:15956600-15958800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr20:15956800-15957800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr20:15956800-15958000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr20:15956800-15958400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:15956800-15959200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr20:15957000-15957400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr20:15957000-15957400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr20:15957000-15957400	Enhancers	Adipose Nuclei	Adipose
19	chr20:15957000-15957400	Enhancers	Fetal Muscle Leg	muscle
20	chr20:15957000-15959200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr20:15957200-15957400	Enhancers	GM12878-XiMat	blood
22	chr20:15957200-15957800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr20:15957200-15959400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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